Pairwise Alignments

Query, 525 a.a., response regulator from Herbaspirillum seropedicae SmR1

Subject, 496 a.a., diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  202 bits (514), Expect = 2e-56
 Identities = 157/472 (33%), Positives = 238/472 (50%), Gaps = 30/472 (6%)

Query: 51  RSYSGNVAKALARHAYDVLQATDGLLLDM-SDRIDSVGIA-HARLVDLMPMLRRLSSEMP 108
           R+ + N+A A   H    ++  D +LLDM  D +D+     H R       L+   S + 
Sbjct: 40  RNDAMNLATAFEAHVQSTIRLMDIVLLDMREDVLDNADFERHVR-----EELQAYGSFVA 94

Query: 109 QLDGLYVFDEHGKRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGP-HVGKALLSRSTGRW 167
           QL    V D+HG+   ++    + P + SDR++F  HRD+       + K +L R + +W
Sbjct: 95  QLA---VIDKHGRLAFSNLESSVKPVDLSDREHFRVHRDNPQEDRLFISKPVLGRVSKQW 151

Query: 168 IIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTL---LTRMP 224
            I  +R + H +G FAGVL+ ++  N F   Y+ +++G  G+IALL  D +L    +  P
Sbjct: 152 TIQFTRPI-HQNGEFAGVLVLSVPTNFFADYYQQIDVGLHGAIALLGTDRSLRAIASGTP 210

Query: 225 FDPGYINRDFSQGRLFLEGLPHSPF-GYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLAR 283
               Y        R +++  P +P  GY E VS LD   R  +Y+ +    +V++V L+ 
Sbjct: 211 IAGRYGRFKVPADRPYVD--PDAPVRGYYEGVSSLDGEYRLGAYRRLTDAGVVVLVMLSP 268

Query: 284 EEALADWKQQTFVYGAAVLLLLAIIGVFGWRLVGQIELRLRAEDRALQAMGELQMANHRL 343
           ++ +A  +++         LLLA  GV    L+    L      R  Q+   L+ A+ +L
Sbjct: 269 KDFMAAHEERKE-------LLLASAGVISLLLLAVAVLVFVLSSRYFQSTARLRQAHDQL 321

Query: 344 EMLAHQDGLTGLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDE 403
              A+ D LTG  +RR     L+ E  RA R G  L+L+M+D+D FK+ ND++GH AGD 
Sbjct: 322 AQFANTDVLTGARSRRAFFDGLDAELARARRHGDGLSLLMLDIDHFKRVNDVHGHPAGDV 381

Query: 404 CLRRVAGVLKERQRRPGDLAARYGGEEMAMLLPGTDAEGACAVAEKLRAGIQALELPHRG 463
            L++ A V+     R  DL  R GGEE A+ LP TD EGA  VAEK+R  I    +    
Sbjct: 382 VLKQFA-VICAALLRGHDLFGRIGGEEFAIALPNTDLEGARCVAEKIRQAIAQAPVATTA 440

Query: 464 NPVGVVTVSVGVCALELLPSAARSVQALLGAADAALYEAKHEGRNQVRLAAP 515
             +  +TVS+G+   +           L+  AD ALY AKH GR+QV  AAP
Sbjct: 441 GEIS-ITVSIGLACTD---GGQHEADYLIVQADRALYLAKHGGRDQVYAAAP 488