Pairwise Alignments

Query, 924 a.a., pseudouridine synthase from Herbaspirillum seropedicae SmR1

Subject, 912 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella amazonensis SB2B

 Score =  768 bits (1983), Expect = 0.0
 Identities = 391/877 (44%), Positives = 560/877 (63%), Gaps = 12/877 (1%)

Query: 53  EGISEYRFANGFKLLLLPDDSQPTVTVNITYLVGSRHENYGETGMAHLLEHLMFKGSPRH 112
           EGISEYR  NG K+LL PD ++ TVTVN+TY VGS+HENYGETGMAHLLEHL+FKG+P+H
Sbjct: 39  EGISEYRLDNGLKVLLFPDPTKETVTVNVTYKVGSKHENYGETGMAHLLEHLVFKGTPKH 98

Query: 113 PSIPQDFSKRGMNFNGTTWLDRTNYYETFQASPDNLRWAIAMEADRMLNSKIARKDLDSE 172
             IP + S  G   NGTTW DRTNY+ETF A+ +N+ WA++ME+DRM+NS IA+KDLDSE
Sbjct: 99  KDIPAELSSHGARPNGTTWTDRTNYFETFAATEENIDWALSMESDRMVNSFIAKKDLDSE 158

Query: 173 MTVVRNEFEAGETSPTRVMLKRMQSVAYDWHAYGRNTIGARSDIENVRIENLQAFYRTYY 232
           MTVVRNEFE GE SP R+ L+RM + A++WH YG++TIGARSD+ENV IE LQ FYR YY
Sbjct: 159 MTVVRNEFERGENSPFRITLQRMMASAFEWHNYGKSTIGARSDLENVSIERLQDFYRKYY 218

Query: 233 QPDNAVLLIAGKFDAAQVLQWVDQSFGRLPKPKRTLPAFWTVEPTQDGERQFVIRRRGDQ 292
           QPDNA L++AGKF    +L+ ++ +FG +PKP RT+   +TVEP QDGERQ  +RR GD 
Sbjct: 219 QPDNATLIVAGKFAPEDMLKKIEATFGNIPKPNRTIEPLYTVEPAQDGERQVTVRRVGDV 278

Query: 293 QLVALAYKMPSALHPDATALGFAADILTDTPNGRLHKALVETGMATEVYAMPLEGMAPGL 352
           QL+   Y +P   H D  A+    ++L+ TPNGRLHK+LVE  +A+ V+ M  +   PG+
Sbjct: 279 QLLGTIYHVPPGAHEDYAAIDVLNEVLSATPNGRLHKSLVEAKLASSVFGMNFQWQDPGV 338

Query: 353 QMMVAKVKVGGDLDAVRQAMISAVESFSTQPPTPEEVARLHREAANSFETLQNNPQQLAV 412
            + +A++    D+DA ++A++  +ES    P T +EV    R    +     N+ +++A+
Sbjct: 339 AIFMAEMDKTADMDATQKALLDTLESIRNTPITDKEVETAKRTLLKNLTLAFNSSERVAL 398

Query: 413 AMSNAIARGDWRLLFIERDRMQRLSSADIAAAAGRYFRRDNRTVGLYLPDDHPQRAEIPT 472
            +S  +  GDWRLLF+ RDR++++S+A++   A  Y  ++NRT+G ++P + P R EIP 
Sbjct: 399 ELSEWLGMGDWRLLFLNRDRLEKVSAAEVQRVAEYYLTQNNRTLGRFIPAEKPARVEIPL 458

Query: 473 APALDTLLSQYQPRTAIASGEAFDPAPANIEQRTTRIAPGQPPHTALDLALLPKQSRGQT 532
              +D L+  Y+ R  +A GEAFDP+  NI+ RT  +      ++   ++LL K++RG++
Sbjct: 459 VADVDALVKDYKGREQVAQGEAFDPSHTNIDSRTETLT----LNSGTKVSLLQKKTRGES 514

Query: 533 VSVSLHLRFGDAQSLFGQRNVAQLTEAMLMRGTDKLDRRQLADEFARLKI-------NGS 585
           V V +  +FGD +SL G+  V      ML+RG+ K  R Q+ +E  +L+        NG+
Sbjct: 515 VVVRISGQFGDLRSLSGKNAVGDAVGEMLLRGSSKYSREQIKEELDKLQASLRIGGSNGN 574

Query: 586 LY-RFQTTRENLVPAIALVGEVFRHPRMDAAEFEQLKNETVAGLEAGRKDPDTRAGEALS 644
           L+   +TTR NL+P + +V +V R+P     EFE  K ET   +E   +DP + A  A S
Sbjct: 575 LFASVETTRANLLPVLDIVTDVLRNPSFPEKEFELYKTETKVAIEQNLQDPQSLAFNAYS 634

Query: 645 VHFDHYPAGDWRAAQTLEQRIAAVRAVTLEQVKDFHRRFYGASQGELAVVGDFDPAQARS 704
            H   Y   D R   T E+++A +  +TL+QVK +H  FY A Q +++++GDFD     S
Sbjct: 635 RHQSPYGKDDPRYVGTFEEQLAELDKLTLKQVKRYHGDFYNAKQMQVSIIGDFDKDATVS 694

Query: 705 AIDQAFGGWTSAAPYARVLQTWADIPAKRLLVDTPDKENGVYFARQNIRLSDTDPDYPAL 764
           A+D    GW S   Y R+   +  + A  +  +TPDKEN  + A  ++ + D D D PAL
Sbjct: 695 ALDTLTKGWKSKQTYQRIASPYVKLDASPITFNTPDKENATFVASLSLPVGDMDADAPAL 754

Query: 765 AVANFLLGGSSLKSRLADRVRQQDGLSYGIYSGLQVAALTDAGHLTIYAIAAPQNLDKVD 824
            + N++LGG  L SRLA R+RQ+DGLSYG  S L++++    G L  YAI APQNL KV+
Sbjct: 755 TLGNYILGGGFLSSRLATRLRQKDGLSYGAGSFLRLSSEDQRGSLGAYAICAPQNLAKVE 814

Query: 825 AAVREEIALALKDGFSEEELQRAKSGILQQRNQQRAGNDNVAATWTLLMNQDRNFLWQQE 884
              REEIA  LKDGF+ +E++ AKSG+LQ R   R+ +  +  T    +  DR+  +  +
Sbjct: 815 LGFREEIARLLKDGFTADEVEAAKSGLLQGRKVSRSQDKELVGTLVGNLKLDRSMAFDAD 874

Query: 885 IDRKLASLTLAQVNAALRKYVDPARMTTVIARDETKV 921
            + KLA+LT   +N A RKY+       + A D++KV
Sbjct: 875 FEAKLAALTADDLNKAFRKYIKVDDFALIKAGDQSKV 911