Pairwise Alignments

Query, 924 a.a., pseudouridine synthase from Herbaspirillum seropedicae SmR1

Subject, 443 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  165 bits (418), Expect = 5e-45
 Identities = 122/420 (29%), Positives = 206/420 (49%), Gaps = 12/420 (2%)

Query: 46  VSAGPSAEGISEYRFANGFKLLLLPDDSQPTVTVNITYLVGSRHENYGETGMAHLLEHLM 105
           +S   +A  I  +   NG K+++L D S P   + + + VGSR+E  G TG++H  EH+M
Sbjct: 20  MSQATTAADIKSFTLDNGMKIMVLEDASIPNANMYLFWKVGSRNEAPGITGISHFFEHMM 79

Query: 106 FKGSPRH--PSIPQDFSKRGMNFNGTTWLDRTNYYETFQASPDNLRWAIAMEADRMLNSK 163
           F GS ++      +     G   N  T  + T Y + F AS   L     +EADR+ N  
Sbjct: 80  FNGSKKYGPKMFDRTMEAAGGANNAYTTENLTVYTDWFPAS--GLETIFDLEADRIANLD 137

Query: 164 IARKDLDSEMTVVRNEFEAG-ETSPTRVMLKRMQSVAYDWHAYGRNTIGARSDIENVRIE 222
           I    ++SE  VV +E   G E S  R +++ ++ VA+  H Y    IG  SDI    ++
Sbjct: 138 INADMVESERGVVTSERSTGLENSNIRALMEELKGVAFRAHPYSWPVIGHESDIAAWTLD 197

Query: 223 NLQAFYRTYYQPDNAVLLIAGKFDAAQVLQWVDQSFGRLP--KPKRTLPAFWTVEPTQDG 280
           +L  +++TYY P+NAV++IAG     +V    ++ F  +P   P R +    TVEP Q G
Sbjct: 198 DLVQYHKTYYAPNNAVVVIAGDVKLDEVKSLANRYFAPIPAQAPPREVK---TVEPLQKG 254

Query: 281 ERQ-FVIRRRGDQQLVALAYKMPSALHPDATALGFAADILTDTPNGRLHKALVETGMATE 339
           ER+ F+ +       V +AY +P+  H D  AL   A IL+   + RL++++V++ +A E
Sbjct: 255 ERRTFIHKPSASTPNVMMAYHVPATSHEDYYALELLAGILSAGNSSRLYQSMVDSQLALE 314

Query: 340 VYAMPLEGMAPGLQMMVAKVKVGGDLDAVRQAMISAVESFSTQPPTPEEVARLHR-EAAN 398
                     P L  + A    G   DA+ Q +I+     + +  T +E+ ++   +  +
Sbjct: 315 ADTYFPMSFDPNLFYLYAVGAPGVKADALEQELIAQTNRIAAEGVTEQELEKIKNIKLMD 374

Query: 399 SFETLQNNPQQLAVAMSNAIARGDWRLLFIERDRMQRLSSADIAAAAGRYFRRDNRTVGL 458
            + T++    +     +  +  G +  LF   +   +++ ADI   A  Y +R NR+V +
Sbjct: 375 FYRTMETINGKANTLGTYELFFGSFDKLFNAPEAYNKVTIADIQRVAQTYLKRANRSVAV 434



 Score = 40.0 bits (92), Expect = 3e-07
 Identities = 56/265 (21%), Positives = 104/265 (39%), Gaps = 21/265 (7%)

Query: 668 VRAVTLEQVKDFHRRFYGASQGELAVVGDFDPAQARSAIDQAFGGWTSAAPYARVLQTWA 727
           + A TL+ +  +H+ +Y  +   + + GD    + +S  ++ F    + AP  R ++T  
Sbjct: 191 IAAWTLDDLVQYHKTYYAPNNAVVVIAGDVKLDEVKSLANRYFAPIPAQAP-PREVKTVE 249

Query: 728 DIP--AKRLLVDTPDKENGVYFARQNIRLSDTDPDYPALAVANFLLGGSSLKSRL-ADRV 784
            +    +R  +  P           ++  +  +  Y    +A  L  G+S  SRL    V
Sbjct: 250 PLQKGERRTFIHKPSASTPNVMMAYHVPATSHEDYYALELLAGILSAGNS--SRLYQSMV 307

Query: 785 RQQDGLSYGIYSGLQVAALTDAGHLTIYAIAAPQNLDKVDAAVREEIALALK---DGFSE 841
             Q  L    Y  +      D     +YA+ AP    K DA  +E IA   +   +G +E
Sbjct: 308 DSQLALEADTYFPMSF----DPNLFYLYAVGAPG--VKADALEQELIAQTNRIAAEGVTE 361

Query: 842 EELQRAKSGILQ---QRNQQRAGNDNVAATWTLLMNQDRNFLWQQEIDRKLASLTLAQVN 898
           +EL++ K+  L    +  +   G  N   T+ L            E   K   +T+A + 
Sbjct: 362 QELEKIKNIKLMDFYRTMETINGKANTLGTYELFFGSFDKLFNAPEAYNK---VTIADIQ 418

Query: 899 AALRKYVDPARMTTVIARDETKVRK 923
              + Y+  A  +  +   E ++ K
Sbjct: 419 RVAQTYLKRANRSVAVLSAEEEMDK 443