Pairwise Alignments

Query, 924 a.a., pseudouridine synthase from Herbaspirillum seropedicae SmR1

Subject, 459 a.a., Peptidase M16-like (NCBI) from Rhodospirillum rubrum S1H

 Score =  135 bits (340), Expect = 6e-36
 Identities = 123/433 (28%), Positives = 200/433 (46%), Gaps = 44/433 (10%)

Query: 58  YRFANGFKLLLLPDDSQPTVTVNITYLVGSRHENYGETGMAHLLEHLMFKGSPRHPSIPQ 117
           +   NG +++++P+   P V   + Y +G+  E  G++G+AHLLEHLMFKG+P  P  P 
Sbjct: 40  FTLPNGMEVVVIPNHRVPVVHHMVWYKIGAADEPAGKSGLAHLLEHLMFKGTPTIP--PG 97

Query: 118 DFSK----RGMNFNGTTWLDRTNYYETFQASPDNLRWAIAMEADRMLNSKIARKDLDSEM 173
           +FSK     G   N  T  D T Y+++   + D L   + MEADRM N +++ +D  +E 
Sbjct: 98  EFSKIVARNGGQDNAFTSSDFTAYFQSI--AKDRLPMVMEMEADRMANLRLSEEDFQTER 155

Query: 174 TVVRNEFEA-GETSPTRVMLKRMQSVAYDWHAYGRNTIGARSDIENVRIENLQAFYRTYY 232
            VVR E  +  +  P  ++ +R+    +  H Y    IG   ++  +   +  AFY  YY
Sbjct: 156 QVVREERRSRTDNEPGELLSERIGQALWGTHPYKNPIIGWEPELMALTRADALAFYDRYY 215

Query: 233 QPDNAVLLIAGKFDAAQVLQWVDQSFGRLPK-----------PKRTLP----AFWTVEPT 277
            P+NA+L++AG   AA++    ++++G LP+           P R LP       T+   
Sbjct: 216 APNNAILVVAGDITAAELKPLAERTYGALPRRDTPQRASLRDPLRALPPPAETVITMHHA 275

Query: 278 QDGERQFVIRRRGDQQLVALAYKMPSALHPD---ATALGFAADILTDTPNGRLHKALV-E 333
           Q  +  F  R           Y  PSA       A AL    +IL    +GRL+K LV E
Sbjct: 276 QVAQPSFSRR-----------YVAPSAAFDPQGMADALEVLDEILGGGSSGRLYKHLVIE 324

Query: 334 TGMATEVYAMPL-EGMAPGLQMMVAKVKVGGDLDAVRQAMISAVESFSTQPPTPEEVARL 392
            GMA    +    E +  G   + A  + G  +  +  A+ + V S   Q    +EV   
Sbjct: 325 RGMAVSAGSWYRGEALDWGSFGLYASPRDGVAMADLVAAVDAEVASLLDQGVKADEVDDA 384

Query: 393 HREAANSFETLQNNPQQLAVAMSNAIARGDWRLLFIER--DRMQRLSSADIAAAAGRYF- 449
            R         +++  + A A+  A+  G   +  +E   +R++ ++   ++AAA     
Sbjct: 385 KRRLTAGLVYARDSLSEGARALGEALTTGS-SVAQVESWPERIKAVTPEQVSAAARAVLG 443

Query: 450 RRDNRTVGLYLPD 462
           RRD    G  LP+
Sbjct: 444 RRDRSVTGFLLPE 456



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 87/405 (21%), Positives = 160/405 (39%), Gaps = 32/405 (7%)

Query: 519 LDLALLPKQSRGQTVSVSLHLRFGDAQSLFGQRNVAQLTEAMLMRGTDKLDRRQLADEFA 578
           +++ ++P   R   V   +  + G A    G+  +A L E ++ +GT  +   + +   A
Sbjct: 46  MEVVVIPNH-RVPVVHHMVWYKIGAADEPAGKSGLAHLLEHLMFKGTPTIPPGEFSKIVA 104

Query: 579 RLKINGSLYR-------FQTTRENLVPAIALVGEVFRHPRMDAAEFEQLKNETVAGLEAG 631
           R     + +        FQ+  ++ +P +  + E  R   +  +E E  + E     E  
Sbjct: 105 RNGGQDNAFTSSDFTAYFQSIAKDRLPMVMEM-EADRMANLRLSE-EDFQTERQVVREER 162

Query: 632 RKDPDTRAGEALSVHFDHYPAGDWRAAQTLEQRIAAVRAVTLEQVKDFHRRFYGASQGEL 691
           R   D   GE LS        G       +      + A+T      F+ R+Y  +   L
Sbjct: 163 RSRTDNEPGELLSERIGQALWGTHPYKNPIIGWEPELMALTRADALAFYDRYYAPNNAIL 222

Query: 692 AVVGDFDPAQARSAIDQAFGGW----TSAAPYARVLQTWADIPAKRLLVDTPDKENGVYF 747
            V GD   A+ +   ++ +G      T      R        PA+ ++     +     F
Sbjct: 223 VVAGDITAAELKPLAERTYGALPRRDTPQRASLRDPLRALPPPAETVITMHHAQVAQPSF 282

Query: 748 ARQNIRLS---DTDPDYPALAVANFLLGGSSLKSRLADRVRQQDGLSYGIYSGLQVAALT 804
           +R+ +  S   D      AL V + +LGG S   RL   +  + G++    S  +  AL 
Sbjct: 283 SRRYVAPSAAFDPQGMADALEVLDEILGGGS-SGRLYKHLVIERGMAVSAGSWYRGEAL- 340

Query: 805 DAGHLTIYAIAAPQN---LDKVDAAVREEIALALKDGFSEEELQRAK----SGILQQRNQ 857
           D G   +Y  A+P++   +  + AAV  E+A  L  G   +E+  AK    +G++  R+ 
Sbjct: 341 DWGSFGLY--ASPRDGVAMADLVAAVDAEVASLLDQGVKADEVDDAKRRLTAGLVYARDS 398

Query: 858 QRAGNDNVAATWTLLMNQDRNFLWQQEIDRKLASLTLAQVNAALR 902
              G   +    T   +  +   W +    ++ ++T  QV+AA R
Sbjct: 399 LSEGARALGEALTTGSSVAQVESWPE----RIKAVTPEQVSAAAR 439