Pairwise Alignments

Query, 924 a.a., pseudouridine synthase from Herbaspirillum seropedicae SmR1

Subject, 453 a.a., peptidase M16 domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  124 bits (311), Expect = 1e-32
 Identities = 99/316 (31%), Positives = 152/316 (48%), Gaps = 34/316 (10%)

Query: 17  FFLSVPAAQAATATADAAPPAAIKSLPAGVSAGPSAEGISEYRFANGFKLLLLPDDSQPT 76
           FF  + AA  A + + AAP  A             AE ++ Y   NG +++++ D     
Sbjct: 5   FFPRLAAAGLAVSLSVAAPAQA-------------AEDVTTYTLDNGLEIVVIEDHRAAA 51

Query: 77  VTVNITYLVGSRHENYGETGMAHLLEHLMFKGSPRHPSIPQDFSK----RGMNFNGTTWL 132
           VT  + Y  G+  E  G++G+AH LEHL+FKG+      P +FS      G + N  T  
Sbjct: 52  VTNMVWYRTGAADEPPGKSGIAHYLEHLLFKGTDE--LAPGEFSATVQANGGSDNAFTSW 109

Query: 133 DRTNYYETFQASPDNLRWAIAMEADRMLNSKIARKDLDSEMTVVRNE-FEAGETSPTRVM 191
           D T Y++   A  D L   I MEADRM++ +++ + +  E  V+  E  +  ++SP  + 
Sbjct: 110 DYTGYFQRVAA--DRLELMIKMEADRMVDLELSEEIVLPERDVILEERSQRVDSSPGSIF 167

Query: 192 LKRMQSVAYDWHAYGRNTIGARSDIENVRIENLQAFYRTYYQPDNAVLLIAGKFDAAQVL 251
            ++ ++  Y  H YG   IG R ++E +  ++   FY TYY P+NA+L++AG     +V 
Sbjct: 168 GEQRRAAQYLNHPYGVPIIGWRHEMEQLSRQDALDFYETYYAPNNAILIVAGDVQPEEVK 227

Query: 252 QWVDQSFGRLPK----PKRTLPAFWTVEPTQDGERQFVIR-RRGDQQLVALAYKMP---S 303
           +  +Q FG +P     P R  P    VEP Q  ER+      R  Q  V   Y  P   S
Sbjct: 228 RLAEQYFGPIPANPDLPARVRP----VEPPQVAERRIAYADPRVAQPYVIRTYLAPERDS 283

Query: 304 ALHPDATALGFAADIL 319
                A AL   A++L
Sbjct: 284 GAQETAAALTLLAELL 299



 Score = 43.5 bits (101), Expect = 3e-08
 Identities = 90/422 (21%), Positives = 154/422 (36%), Gaps = 67/422 (15%)

Query: 529 RGQTVSVSLHLRFGDAQSLFGQRNVAQLTEAMLMRGTDKLDRRQLA----------DEFA 578
           R   V+  +  R G A    G+  +A   E +L +GTD+L   + +          + F 
Sbjct: 48  RAAAVTNMVWYRTGAADEPPGKSGIAHYLEHLLFKGTDELAPGEFSATVQANGGSDNAFT 107

Query: 579 RLKINGSLYRFQTTRENLVPAIALVGEVFRHPRMDAAEFEQLKNETVAGLEAGRK---DP 635
                G   R    R  L+  +    E  R   ++ +E   L    V   E  ++    P
Sbjct: 108 SWDYTGYFQRVAADRLELMIKM----EADRMVDLELSEEIVLPERDVILEERSQRVDSSP 163

Query: 636 DTRAGEAL-SVHFDHYPAG----DWRAAQTLEQRIAAVRAVTLEQVKDFHRRFYGASQGE 690
            +  GE   +  + ++P G     WR    +EQ       ++ +   DF+  +Y  +   
Sbjct: 164 GSIFGEQRRAAQYLNHPYGVPIIGWR--HEMEQ-------LSRQDALDFYETYYAPNNAI 214

Query: 691 LAVVGDFDPAQARSAIDQAFGGWTSAAPYARVLQTWADIPAKRLLVDTPD-KENGVYFAR 749
           L V GD  P + +   +Q FG           +    D+PA+   V+ P   E  + +A 
Sbjct: 215 LIVAGDVQPEEVKRLAEQYFG----------PIPANPDLPARVRPVEPPQVAERRIAYAD 264

Query: 750 QNI-------------RLSDTDPDYPALAVANFLLGGSSLKSRLADRVRQQDG---LSYG 793
             +             R S       AL +   LLGGSS  S L +++  ++     +  
Sbjct: 265 PRVAQPYVIRTYLAPERDSGAQETAAALTLLAELLGGSSATSFLGEKLEFEESRAVYTSA 324

Query: 794 IYSGLQVAALTDAGHLTIYAIAAPQNLDKVDAAVREEIALALKDGFSEEELQRAKSGILQ 853
            YSG+   +L D     I   A   +L + +A +   +   +      E L R K   +Q
Sbjct: 325 FYSGV---SLDDTTFGLIVVPAEDVSLAEAEADLDRVLEQFMASEIDAEALDRIK---MQ 378

Query: 854 QRNQQRAGNDNV---AATWTLLMNQDRNFLWQQEIDRKLASLTLAQVNAALRKYVDPARM 910
            R  +  G D+V   A  +   +         Q   + LA++T   + AA     D  + 
Sbjct: 379 VRAAEIYGRDSVDARAREYGTALTSGLTVADVQAWPKVLAAVTAEDIKAAAEMVFDKRKA 438

Query: 911 TT 912
            T
Sbjct: 439 VT 440