Pairwise Alignments

Query, 924 a.a., pseudouridine synthase from Herbaspirillum seropedicae SmR1

Subject, 471 a.a., peptidase M16 domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  147 bits (370), Expect = 2e-39
 Identities = 113/411 (27%), Positives = 180/411 (43%), Gaps = 8/411 (1%)

Query: 55  ISEYRFANGFKLLLLPDDSQPTVTVNITYLVGSRHENYGETGMAHLLEHLMFKGSPRHP- 113
           I  Y  ANG  + LLP     T+++   + VG+R+E  G+TG AHL EH++FKGS + P 
Sbjct: 39  IETYTLANGLTVHLLPQADMHTLSIASQFNVGARNEAKGQTGYAHLFEHMLFKGSEQAPG 98

Query: 114 -SIPQDFSKRGMNFNGTTWLDRTNYYETFQASPDNLRWAIAMEADRMLNSKIARKDLDSE 172
            S  Q  S  G  FN +T  D TNYY T  +   NL   + +E DR +   + +  + ++
Sbjct: 99  DSYAQQLSALGARFNASTHFDYTNYYVTLPSQALNL--GLFLEGDRFIRPDLNQTTVKNQ 156

Query: 173 M-TVVRNEFEAGETSP-TRVMLKRMQSVAYDWHAYGRNTIGARSDIENVRIENLQAFYRT 230
             TV++   +  +  P  R  ++ +     D   YG   IG+R DI     E L AF+R 
Sbjct: 157 QETVLQEMAQTIDNQPYVRSAMEFLLEQVKD-TPYGHGIIGSREDITEASPERLTAFHRD 215

Query: 231 YYQPDNAVLLIAGKFDAAQVLQWVDQSFGRLPKPKRTLPAFWTVEPTQDGERQFVIRRRG 290
           +Y+PD   L + GK   + +   + Q F   P P + +  F  ++ T       +I  RG
Sbjct: 216 HYRPDAMQLSLVGKL-PSDIKSLIAQHFNAWPTPNQPITEFDELKITPKPIHAELIDERG 274

Query: 291 DQQLVALAYKMPSALHPDATALGFAADILTDTPNGRLHKALVETGMATEVYAMPLEGMAP 350
               + LA+      HPDA A+      L       + +           Y++P E    
Sbjct: 275 PWPGLLLAWHTVGKNHPDAAAMRLLEGYLFQNTRSAIAQISQHDPAQMLSYSLPFELENH 334

Query: 351 GLQMMVAKVKVGGDLDAVRQAMISAVESFSTQPPTPEEVARLHREAANSFETLQNNPQQL 410
           G+  +V   +    LD + + ++  V        +  E+ +L +   N+     +N Q L
Sbjct: 335 GITNLVLVPRAKTSLDDLTEKVLGVVAKVQQTSLSDAELCQLKQTWLNNQLAQLDNTQSL 394

Query: 411 AVAMSNAIARGDWRLLFIERDRMQRLSSADIAAAAGRYFRRDNRTVGLYLP 461
           A  +S    +     L  +  R+  +S+ DI   A RYF  D   V L  P
Sbjct: 395 ATLLSATAKQDQMHPLTAQWQRINSVSAEDIQRVATRYFTTDMVRVDLLPP 445