Pairwise Alignments

Query, 291 a.a., ABC transporter permease from Herbaspirillum seropedicae SmR1

Subject, 293 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  157 bits (397), Expect = 3e-43
 Identities = 87/283 (30%), Positives = 148/283 (52%), Gaps = 2/283 (0%)

Query: 9   LPWLLLSPAMVLLIAFTHYPALATLWHSFFSTPKGVRPSVFVGLENYRLMADDPVFWQAL 68
           LP LL++P +V+   F  YPA   +W S F          +VGL N+  +  DP +  + 
Sbjct: 12  LPLLLVAPQIVITALFFFYPAGQAIWQSLFIPDPFGLSMQWVGLGNFEFLFSDPFYRASF 71

Query: 69  CNNLWFALGTIPLAIALAILMALWVNEKLAGRGVLRLAYFTPTVLPMIAVANIWLFFYTP 128
                F++    +++ +A+ +AL  +  + G G  R     P  +       +WLF +  
Sbjct: 72  VTTAVFSILVTVVSMGVALYLALLADRLIKGSGTYRTLLIWPYAVAPAVAGVLWLFMFNT 131

Query: 129 QYGLLEQITGALGLPSHNWLGNPQTVLGALMVVAVWKEAGFFMIFYLAALQQISPVLAEA 188
           + G++    G LG   ++ L N +  +G ++V + W    +  +F+LA LQ I   + EA
Sbjct: 132 RVGVVTWYLGQLGYDWNHVL-NEEEAMGLVVVASAWGRISYNFLFFLAGLQAIPKSVIEA 190

Query: 189 AALEGASRWQYFWRVQFPLLMPTTLFVLINALINA-FRLVDHIVVMTKGGPDNASSLLLY 247
           AA++GA  W  F  + FPLL P T F+L+  +I A F     I  +T GGP  A+++L+Y
Sbjct: 191 AAIDGARFWTRFRTIVFPLLSPVTFFLLVVNIIYAFFETFGVIHTITSGGPQQATTILVY 250

Query: 248 YIYEVGFAFWDSSYAAALTVVLLALLGLIALVKFRVLDRRTHY 290
            +Y  GF   D   +AA +VVLL L+ ++ +++F+ ++R+ HY
Sbjct: 251 KVYSDGFVGQDLGSSAAQSVVLLVLVSILTVIQFKYVERKVHY 293