Pairwise Alignments

Query, 337 a.a., RNA polymerase sigma factor RpoS from Herbaspirillum seropedicae SmR1

Subject, 326 a.a., RNA polymerase sigma-38 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  281 bits (719), Expect = 2e-80
 Identities = 161/323 (49%), Positives = 221/323 (68%), Gaps = 9/323 (2%)

Query: 16  EEELDDSVDEIDEPEVIDGDAGEEVQEAAPAEGV-DELKKVLAAELSTDTTQHYLNKIGA 74
           EE +D SVD  +     +  A + VQE    + V D+L+K L      D TQ YL +IG 
Sbjct: 10  EELVDFSVDTAEFDLDKEDIAADLVQELGLEQQVQDDLQKNL------DATQLYLGEIGF 63

Query: 75  KPLLTAAEELHFATQAKAGEFVARQKMIEHNLRLVVSIAKHYINRGVALLDLIEEGNLGL 134
            PLL+A EE++F+ +A  G   +R +MIE NLRLVV IA+ Y NRG+ALLDLIEEGNLGL
Sbjct: 64  SPLLSAEEEVYFSRKALKGCEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGL 123

Query: 135 MRAIDKFEPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHMVRELNQILRAKYHLEA 194
           +RA++KF+PERGFRFSTYATWWIRQ+IERAIMNQ RT+RLP+H+V+ELN  LR    L A
Sbjct: 124 IRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTAREL-A 182

Query: 195 QQRDGRDASAEDIAHLVDRPVEEVQDVLALSEHAASLDTPLDNDPQASLMDLLPSAVEEH 254
           Q+ D  + +AE+IA  +     +V  +L L+E   S+D PL  D   +L+D+L       
Sbjct: 183 QKLD-HEPTAEEIAEKLQVSSVDVSRMLKLNEKITSVDVPLGGDNDKALLDVLADDDNVG 241

Query: 255 PDTRAESQEMAVLIREWLKSLSEKQRVVVARRFGLDNDDPSTLEQLASEMGITRERVRQV 314
           PD + + ++++  + +WL  L+ KQR V+ARRFGL   +PSTLE + +E+G+TRERVRQ+
Sbjct: 242 PDYKVQDEDISNSVVKWLNELNTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQI 301

Query: 315 QQEALIKLKRLLTSRGVGRDALF 337
           Q EAL +L+ LL ++G+  +ALF
Sbjct: 302 QVEALKRLRDLLGAQGLSVEALF 324