Pairwise Alignments

Query, 337 a.a., RNA polymerase sigma factor RpoS from Herbaspirillum seropedicae SmR1

Subject, 616 a.a., RNA polymerase sigma-70 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  201 bits (510), Expect = 5e-56
 Identities = 98/227 (43%), Positives = 154/227 (67%), Gaps = 2/227 (0%)

Query: 97  ARQKMIEHNLRLVVSIAKHYINRGVALLDLIEEGNLGLMRAIDKFEPERGFRFSTYATWW 156
           A+++M+E NLRLV+SIAK Y NRG+  LDLI+EGN+GLM+A+DKFE  RG++FSTYATWW
Sbjct: 378 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 437

Query: 157 IRQSIERAIMNQARTVRLPVHMVRELNQILRAKYHLEAQQRDGRDASAEDIAHLVDRPVE 216
           IRQ+I R+I +QART+R+PVHM+  +N++ R    +   Q  GR+ S E++A  +  P +
Sbjct: 438 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQM--LQEMGREPSPEELAERMMMPED 495

Query: 217 EVQDVLALSEHAASLDTPLDNDPQASLMDLLPSAVEEHPDTRAESQEMAVLIREWLKSLS 276
           +++ VL +++   S++TP+ +D  + L D +     E P   A S+ +     E L  L+
Sbjct: 496 KIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLKSATHEVLAGLT 555

Query: 277 EKQRVVVARRFGLDNDDPSTLEQLASEMGITRERVRQVQQEALIKLK 323
            ++  V+  RFG+D +   TLE++  +  +TRER+RQ++ +AL KL+
Sbjct: 556 AREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 602



 Score = 30.4 bits (67), Expect = 1e-04
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 11/109 (10%)

Query: 7   DHLPDQDPREEELDDSVDEIDE---------PEVIDGDAGEEVQEAAPAEGVDELKKVLA 57
           DHLP      ++++D +  I++         P+  D    E+  +   AE        + 
Sbjct: 29  DHLPADMVDSDQIEDIIQMINDMGIRVFEEAPDADDMMMSEDNTDEDAAEEAAAALATVE 88

Query: 58  AEL--STDTTQHYLNKIGAKPLLTAAEELHFATQAKAGEFVARQKMIEH 104
           +EL  +TD  + Y+ ++G   LLT   E+  A + + G    +  + E+
Sbjct: 89  SELGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGINTVQSSVAEY 137