Pairwise Alignments

Query, 337 a.a., RNA polymerase sigma factor RpoS from Herbaspirillum seropedicae SmR1

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Klebsiella michiganensis M5al

 Score =  293 bits (749), Expect = 5e-84
 Identities = 157/318 (49%), Positives = 219/318 (68%), Gaps = 8/318 (2%)

Query: 20  DDSVDEIDEPEVIDGDAGEEVQEAAPAEGVDELKKVLAAELSTDTTQHYLNKIGAKPLLT 79
           ++ V+  DE  +++    EE  ++  AE  +EL    A +   D TQ YL +IG  PLLT
Sbjct: 19  ENGVEVFDEKALVE----EEPSDSDLAE--EELLSQGATQRVLDATQLYLGEIGYSPLLT 72

Query: 80  AAEELHFATQAKAGEFVARQKMIEHNLRLVVSIAKHYINRGVALLDLIEEGNLGLMRAID 139
           A EE++FA +A  G+  +R++MIE NLRLVV IA+ Y NRG+ALLDLIEEGNLGL+RA++
Sbjct: 73  AEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVE 132

Query: 140 KFEPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHMVRELNQILRAKYHLEAQQRDG 199
           KF+PERGFRFSTYATWWIRQ+IERAIMNQ RT+RLP+H+V+ELN  LR     E   +  
Sbjct: 133 KFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTA--RELSHKLD 190

Query: 200 RDASAEDIAHLVDRPVEEVQDVLALSEHAASLDTPLDNDPQASLMDLLPSAVEEHPDTRA 259
            + SAE+IA  +D+PV++V  +L L+E   S+DTPL  D + +L+D+L    +  P+   
Sbjct: 191 HEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKDNGPEDTT 250

Query: 260 ESQEMAVLIREWLKSLSEKQRVVVARRFGLDNDDPSTLEQLASEMGITRERVRQVQQEAL 319
           +  +M   I +W   L+ KQR V+ARRFGL   + +TLE +  E+G+TRERVRQ+Q E L
Sbjct: 251 QDDDMKQSIVKWQFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGL 310

Query: 320 IKLKRLLTSRGVGRDALF 337
            +L+ +L S+G+  +ALF
Sbjct: 311 RRLREILQSQGLNIEALF 328



 Score = 23.5 bits (49), Expect = 0.008
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 3   SNRRDHLPDQDPREEELDDSVDEI 26
           S++ DH P  +   E+LD  VD++
Sbjct: 186 SHKLDHEPSAEEIAEQLDKPVDDV 209