Pairwise Alignments

Query, 337 a.a., RNA polymerase sigma factor RpoS from Herbaspirillum seropedicae SmR1

Subject, 590 a.a., RNA polymerase sigma-70 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  206 bits (524), Expect = 1e-57
 Identities = 102/233 (43%), Positives = 158/233 (67%), Gaps = 2/233 (0%)

Query: 97  ARQKMIEHNLRLVVSIAKHYINRGVALLDLIEEGNLGLMRAIDKFEPERGFRFSTYATWW 156
           A+Q++I  NLRLVVSIAK Y NRG+  LDLI+EGN+GLM+A+DKFE +RG++FSTYATWW
Sbjct: 352 AKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWW 411

Query: 157 IRQSIERAIMNQARTVRLPVHMVRELNQILRAKYHLEAQQRDGRDASAEDIAHLVDRPVE 216
           IRQ+I RAI +QART+R+PVHM+  +N+++R   +L   Q  GRD + E+IA  +D P++
Sbjct: 412 IRQAITRAIADQARTIRIPVHMIETINKLIRTSRYL--VQELGRDPTPEEIAERMDYPID 469

Query: 217 EVQDVLALSEHAASLDTPLDNDPQASLMDLLPSAVEEHPDTRAESQEMAVLIREWLKSLS 276
           +V+ VL +++   SL+TP+ ++  +SL D +       P     + ++   I   L  L+
Sbjct: 470 KVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPAEEVVNTKLGEQIASVLADLT 529

Query: 277 EKQRVVVARRFGLDNDDPSTLEQLASEMGITRERVRQVQQEALIKLKRLLTSR 329
            ++  V+ +RFG+      TLE++     +TRER+RQ++ +AL KL+  + S+
Sbjct: 530 PREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQ 582



 Score = 34.3 bits (77), Expect = 8e-06
 Identities = 30/136 (22%), Positives = 65/136 (47%), Gaps = 16/136 (11%)

Query: 9   LPDQDPREEELDDSVDEIDEPEVIDGDAGE----------EVQEAAPAEG----VDELKK 54
           LP +    E++++ +   D+ ++   D+ +          E +E AP+EG     D+ + 
Sbjct: 32  LPAEVNTPEQIEEIIGIFDQLDIAIVDSEKDGKKISMSPGESEEEAPSEGGLDLSDDEET 91

Query: 55  VLAAELSTDTTQHYLNKIGAKPLLTAAEELHFATQAKAGEFVARQKMIEHNLRL--VVSI 112
           V  +  STD  + YL ++G+ PLL    E+  A + + GE      ++E  + +  +V++
Sbjct: 92  VDYSSRSTDPVRMYLREMGSVPLLDRDGEVVIAKKIEMGEQDVLYALVEVPVAVEELVNV 151

Query: 113 AKHYINRGVALLDLIE 128
            +      + L D+++
Sbjct: 152 GEDLKQNRIKLKDVVK 167