Pairwise Alignments

Query, 337 a.a., RNA polymerase sigma factor RpoS from Herbaspirillum seropedicae SmR1

Subject, 472 a.a., RNA polymerase sigma factor from Bifidobacterium breve UCC2003

 Score =  209 bits (533), Expect = 9e-59
 Identities = 123/362 (33%), Positives = 195/362 (53%), Gaps = 48/362 (13%)

Query: 7   DHLPDQDPREEELDDSVDEIDEPEVIDGDAGEEVQEAAPAEGV----------------- 49
           D L D D   ++ +D  DE DE E  +G A  +  E    +G                  
Sbjct: 100 DDLEDADAESDD-EDIDDEDDEDEEDEGKAASKAPEQPKEKGAYVVSDTDDEEENIIPAG 158

Query: 50  DELKKVLAAELSTDTTQHYLNKIGAKPLLTAAEELHFATQAKAGEFV------------- 96
           +  ++V+AA  + D  + YL +IG   LL A +E+  + + +AG +              
Sbjct: 159 NPKRRVIAAGATADPVKDYLKQIGRVSLLNAEQEVDLSERIEAGLYAQHLLDTESEGMEF 218

Query: 97  ---------------ARQKMIEHNLRLVVSIAKHYINRGVALLDLIEEGNLGLMRAIDKF 141
                          A+  ++E NLRLVVS+AK Y  RG+  LDLI+EGNLGL+RA++KF
Sbjct: 219 KRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 278

Query: 142 EPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHMVRELNQILRAKYHLEAQQRDGRD 201
           + ++GF+FSTYATWWIRQ+I RA+ +QART+R+PVHMV  +N++ R +  +   Q  GR+
Sbjct: 279 DWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQM--LQDLGRE 336

Query: 202 ASAEDIAHLVDRPVEEVQDVLALSEHAASLDTPLDNDPQASLMDLLPSAVEEHPDTRAES 261
            + +++A  +D PVE+VQ+V        SL TPL  D  +   DL+       P      
Sbjct: 337 PTPDELARELDMPVEKVQEVQKYGREPISLHTPLGEDGDSEFGDLIEDTDAIAPSDAVAF 396

Query: 262 QEMAVLIREWLKSLSEKQRVVVARRFGLDNDDPSTLEQLASEMGITRERVRQVQQEALIK 321
             +    ++ L++LS ++  V+  R+GL++  P TL+ +    G+TRER+RQ++ + + K
Sbjct: 397 SLLQEQFKQVLETLSPREAGVIKMRYGLEDGQPKTLDDIGRVYGVTRERIRQIESKTMSK 456

Query: 322 LK 323
           L+
Sbjct: 457 LR 458



 Score = 26.9 bits (58), Expect = 0.001
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 15  REEEL-DDSVDEIDEPEVIDGDAGEEVQEAAPAEGVDELK 53
           +EEEL  + + + D+PE +D D  +E  +   +E VD+L+
Sbjct: 64  KEEELPQNDISQSDDPEDLDVDNLDEDLDDVESEDVDDLE 103