Pairwise Alignments

Query, 420 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase from Herbaspirillum seropedicae SmR1

Subject, 370 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase from Pseudomonas stutzeri RCH2

 Score =  210 bits (535), Expect = 5e-59
 Identities = 145/403 (35%), Positives = 213/403 (52%), Gaps = 56/403 (13%)

Query: 7   ASGPLVRRNSRRVVISHGGREIVVGGGAPVMVQSMTNTDTADAIGTAIQIKDLARAGSEV 66
           +  P+ RR SR++ +      + VGG AP+ VQSMTNT+T D   T  QI+ LA AG+++
Sbjct: 3   SESPIKRRQSRKIWVG----SVPVGGDAPISVQSMTNTETCDVEATVAQIQRLANAGADI 58

Query: 67  VRLTVNTPEAAAAVPAIREQLDRMGVDVPLVGDFHYNGHTLLTEYPECAQALSKYRINPG 126
           VR++V + EAA A   I+       V +PLV D H++    L         L   RINPG
Sbjct: 59  VRVSVPSMEAAEAFGRIKRL-----VQLPLVADIHFDYQIALRVAELGVDCL---RINPG 110

Query: 127 NVGKGAKRDTQFAQMIEVACKYDKPVRIGVNWGSLDQALLARIMDENAGRAEPWSAQAVM 186
           N+G    R+ +   +++ A     P+RIGVN GSL++ L      +  G   P       
Sbjct: 111 NIG----REDRVRAVVDAARDKGIPIRIGVNAGSLEKDL-----QKKYGEPTP------- 154

Query: 187 YEALVTSAIENAQRAEELGMAGDKIILSCKVSGVQDLIAVYRELARRCDYPLHLGLTEAG 246
            +ALV SA+ +    + L     K+  S K S V   +  YR LA + + PLHLG+TEAG
Sbjct: 155 -QALVESALRHVDHLDRLDFQDFKV--SVKASDVFMAVEAYRLLAGQIEQPLHLGITEAG 211

Query: 247 MGSKGIVASTAALSVLLQEGIGDTIRISLTPEPGGDRTKEVVVGQEILQTMGLRKFTPMV 306
               G V S   L +LL +GIGDTIR+SL  +P     +E+ VG +IL+++ LR      
Sbjct: 212 GLRSGTVKSAVGLGMLLADGIGDTIRVSLAADP----VEEIKVGFDILKSLRLRSRGINF 267

Query: 307 IACPGCGRTTSTV---FQDLADKIQTFLREQMPVWKGKYPGVEAMNVAVMGCIVNGPGES 363
           IACP C R    V     +L  +++  L                M+VAV+GC+VNGPGE+
Sbjct: 268 IACPSCSRQNFDVVKTMNELEARVEDLL--------------VPMDVAVIGCVVNGPGEA 313

Query: 364 KHANIGISLPGTGESPAAPVFIDGEKKMTLRGEHIAEEFQKVV 406
           K A++G+    TG SP   V+IDG+    L  E++ +E ++++
Sbjct: 314 KEAHVGL----TGGSPNNLVYIDGKPAQKLNNENLVDELEQLI 352