Pairwise Alignments

Query, 420 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase from Herbaspirillum seropedicae SmR1

Subject, 363 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  214 bits (546), Expect = 3e-60
 Identities = 154/383 (40%), Positives = 204/383 (53%), Gaps = 50/383 (13%)

Query: 13  RRNSRRVVISHGGREIVVGGGAPVMVQSMTNTDTADAIGTAIQIKDLARAGSEVVRLTVN 72
           RR +R V I      + +GG  PV+VQSM NTDT D   T  QI+ LA  G EVVRL V 
Sbjct: 5   RRRTREVRIG----SVRIGGDNPVVVQSMANTDTRDVDATVGQIRALAAVGCEVVRLAVL 60

Query: 73  TPEAAAAVPAIREQLDRMGVDVPLVGDFHYNGHTLLTEYPECAQALSKYRINPGNVGKGA 132
              AAAA+  IR         VPLV D H++    +        AL   RINPGN+G  A
Sbjct: 61  NEAAAAAIGPIRA-----ASPVPLVADIHFDHRLAVAALEAGVDAL---RINPGNIGGEA 112

Query: 133 KRDTQFAQMIEVACKYDKPVRIGVNWGSLDQALLARIMDENAGRAEPWSAQAVMYEALVT 192
                 A++++ A      +R+GVN GS+++ LL R      G   P        EA+V 
Sbjct: 113 N----VARVVDAARARGACIRVGVNSGSVEKHLLERF-----GGPTP--------EAMVE 155

Query: 193 SAIENAQRAEELGMAGDKIILSCKVSGVQDLIAVYRELARRCDYPLHLGLTEAGMGSKGI 252
           SA+ + +  E+ G    KI  S K S V   I  YR LA RCDYPLH+G+TEAG   +G 
Sbjct: 156 SALGHVRMLEDRGFGDIKI--SLKSSSVLHTIDAYRVLAERCDYPLHIGVTEAGTMLRGS 213

Query: 253 VASTAALSVLLQEGIGDTIRISLTPEPGGDRTKEVVVGQEILQTMGLRKFTPMVIACPGC 312
           V S+  L VLL  GIGDT+R+SLT +P     +E+ V  EIL+++GLR   P +I+CP C
Sbjct: 214 VKSSVGLGVLLWLGIGDTLRVSLTSDP----VEEIPVAWEILRSLGLRHRGPEIISCPTC 269

Query: 313 GRTTSTVFQDLADKIQTFLREQMPVWKGKYPGVEAMNVAVMGCIVNGPGESKHANIGISL 372
           GRT   +   LA +++  L  +           E   VAVMGC VNGPGE++ A+IGI+ 
Sbjct: 270 GRTEIGLI-SLAQEVERRLAGE----------TENFKVAVMGCAVNGPGEAREADIGIA- 317

Query: 373 PGTGESPAAPVFIDGEKKMTLRG 395
              G      +F  GE   T++G
Sbjct: 318 ---GGRDKGIIFRKGEIIRTVKG 337