Pairwise Alignments

Query, 420 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase from Herbaspirillum seropedicae SmR1

Subject, 383 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  179 bits (454), Expect = 1e-49
 Identities = 136/408 (33%), Positives = 214/408 (52%), Gaps = 55/408 (13%)

Query: 11  LVRRNSRRVVISHGGREIVVGGGAPVMVQSMTNTDTADAIGTAIQIKDLARAGSEVVRLT 70
           + RR SR++ +      + +GG AP+ VQ+MTNT T D  GT  Q++  A AG+++VR++
Sbjct: 12  IYRRKSRQIHVG----PVPIGGDAPIAVQTMTNTLTTDIPGTIAQVQAAADAGADIVRVS 67

Query: 71  VNTPEAAAAVPAIREQLDRMGVDVPLVGDFHYNGHTLLTEYPECAQALSKYRINPGNVGK 130
           V   +++ A+  I  +       VP+V D H++    +      A  L   RINPGN+G 
Sbjct: 68  VPDVDSSRALKEIVRESP-----VPIVADIHFHYKRGIEAAEAGAACL---RINPGNIGD 119

Query: 131 GAKRDTQFAQMIEVACKYDKPVRIGVNWGSLDQALLARIMDENAGRAEPWSAQAVMYEAL 190
               + +  ++I+ A   +  +RIGVN GSL++ LL +        AEP        EA+
Sbjct: 120 ----EKRVKEVIKAARDNNCSMRIGVNAGSLEKHLLDKY-------AEPCP------EAM 162

Query: 191 VTSAIENAQRAEELGMAGDKIILSCKVSGVQDLIAVYRELARRCDYPLHLGLTEAGMGSK 250
           V SA+++ +  ++      KI  SCK S V    A Y+ LA   D PLHLG+TEAG    
Sbjct: 163 VESALDHIKILQDNDFHEFKI--SCKASDVFLSAAAYQALADATDAPLHLGITEAGGLMS 220

Query: 251 GIVASTAALSVLLQEGIGDTIRISLTPEPGGDRTKEVVVGQEILQTMGLRKFTPMVIACP 310
           G + S   L  LL  GIGDTIR+SL+ +P     +E+ VG +IL+++GLR     VI+CP
Sbjct: 221 GTIKSAIGLGNLLWMGIGDTIRVSLSADP----VEEIKVGYDILKSLGLRHRGVNVISCP 276

Query: 311 GCGRTTSTVFQDLADKIQTFLREQMPVWKGKYPGVEAMNVAVMGCIVNGPGESKHANIGI 370
            C R    V + +    Q     + P           M+++++GC+VNGPGE+   ++G 
Sbjct: 277 SCARQGFDVIKTVEALEQRLEHIKTP-----------MSLSIIGCVVNGPGEALMTDVGF 325

Query: 371 SLPGTGESPAAPVFIDGEKKMTLRGE----HIAEEFQK--VVLDYVES 412
           +  G G   +  V++ G++   +  E    HI E+ +K    LD +E+
Sbjct: 326 TGGGAG---SGMVYLAGKQSHKMSNEQMIDHIVEQVEKRAAELDAIEA 370