Pairwise Alignments

Query, 192 a.a., C4-dicarboxylate ABC transporter from Herbaspirillum seropedicae SmR1

Subject, 245 a.a., Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 50.4 bits (119), Expect = 2e-11
 Identities = 57/195 (29%), Positives = 83/195 (42%), Gaps = 23/195 (11%)

Query: 4   GFEMPGAAATRPEVPASAPVAWLGAFLRGYHRVAVFLGMIALLVTSCILTYSVVVRYFFH 63
           G   PG A TR         A L    R      V+L  + L +   +LT  VV RY F+
Sbjct: 20  GGRAPGPAITR---------ALLAVAARCDAVARVWLAGVTLAMAG-LLTVQVVFRYAFN 69

Query: 64  QPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGMLSP-LANRVRMFIVDVVSLL 122
               W +E    +LV + F+ S+     R HIG++AL    SP  A R R+ ++ V    
Sbjct: 70  NSLFWSEELGRALLVQLTFIGSSVAWRGRAHIGMDALVARFSPQWAWRARLLVLCVC--- 126

Query: 123 FCAFFTWKSW--ALFHEAWVEGQTTSSTFAPPLWIPYSLMALGMTMLTLQLLVQVLVRI- 179
             AFF   +W  A F    +  QT +   +    + +  + +G  +LTL  L  +L  + 
Sbjct: 127 -VAFFAAVAWHGARFALFLLPQQTAALGVSRA--VVFVAVPVGGALLTLHGLADLLAHLW 183

Query: 180 ---TGTVPATPAGGA 191
              TG   A   GGA
Sbjct: 184 PGPTGADGAVGTGGA 198