Pairwise Alignments

Query, 462 a.a., membrane protein from Herbaspirillum seropedicae SmR1

Subject, 470 a.a., PepSY domain-containing protein from Vibrio cholerae E7946 ATCC 55056

 Score =  120 bits (300), Expect = 1e-31
 Identities = 135/485 (27%), Positives = 204/485 (42%), Gaps = 61/485 (12%)

Query: 11  QAQAAARRQSATALQALLLRMHFYIGLFVGPFILVAALTGTLYVLTPQIESHLYATQLRN 70
           Q  AAARR++   L  L  R HFY GLFV PF+L+ ALTG + +   +IE   YA  L  
Sbjct: 8   QPTAAARRKT---LYFLTWRWHFYAGLFVVPFMLMLALTGLVMLFDDEIEQARYAEVLNV 64

Query: 71  ASQGPAQPLAAQVQAARAFLGPQARLFAVRPAKAPGWNTR--VMFSQPGLGDSESRAIFV 128
             Q    P++ Q+ A +    P+A++    PA  P    R  V+FS     D  ++ + V
Sbjct: 65  TPQAQVMPVSQQLAAVQKAY-PEAQVTQFIPAHQPDLANRFSVLFS-----DGSTQFVTV 118

Query: 129 DPVSLQVRGDLIVYGTSGVLPLRTTLDYLHRNLMLGELGRNYSELAASWLWLGALGGVWL 188
            P S  V G +               + +H  L++G+ G    E+AAS   +  + G++L
Sbjct: 119 SPYSAVVLGAI-----DRSESWYEWANSIHGTLLIGDWGDYLIEVAASLGMILLVSGIYL 173

Query: 189 WW---RARTRG----RVQAARPLTARRLHALVGLWIVIGLVFFSATGLTWSR-WAGERVN 240
           W     AR  G    RV +   +  R LHA +G  + + L+FF  +GL+W+  W G+ V 
Sbjct: 174 WLPLDNARKAGFLKIRVGSGARIFWRDLHANLGGMLSLVLLFFLISGLSWAGIWGGKLVQ 233

Query: 241 LMRAQLGWITPSVSTQLQPGAPAMSMGEHADHMAAHGMAMAMP----------------- 283
                  W T    T    G    S+  HAD    HG    MP                 
Sbjct: 234 ------AWNT--FPTYYTWGEKPQSVLTHAD--LNHGSEKEMPWNLEQTPVPQSHHHGGE 283

Query: 284 --AVDDPARFDMVQSIARAGGIDAAEIEIRPPRAAQQAWVV----REVDRSWPTQVDTVA 337
              V    +F + Q IA+A  +   +  +  PR     + V       D   P    T  
Sbjct: 284 HEMVAVNPQFGIDQVIAQAKALGFTQYRVAFPRGETGVYTVSANTMAGDIVDPRDDRTAH 343

Query: 338 IDADRMRITSRADFASFPLIAKLIRWGVDAHMGVLFGVANQILMAAFGIALTGLIALGYL 397
            D     + +   +  +   AK +  G+  H G L  V N+I    F +A   +   G +
Sbjct: 344 FDQYSGALLTEVTWQDYSPFAKAMAAGISLHQGDL-SVWNKIANVLFCLAFILISVTGVV 402

Query: 398 MWWRRRPAAGASLAPLSAAFMQMSLPQRASVLLLALLLGWNLPLMGASLLVFLLVDVIRY 457
           MWW RRP   A L  +   F Q  + +    L   L++G   PL GA++++ LL+D +  
Sbjct: 403 MWWLRRPTGQARLG-VPPRFEQDGVWKAG--LATLLVIGVAFPLAGATIVLALLLDGLLV 459

Query: 458 RRAGR 462
            R  +
Sbjct: 460 SRIAK 464