Pairwise Alignments

Query, 559 a.a., methyl-accepting chemotaxis transducer transmembrane protein from Herbaspirillum seropedicae SmR1

Subject, 617 a.a., chemotaxis protein from Burkholderia phytofirmans PsJN

 Score =  208 bits (529), Expect = 6e-58
 Identities = 122/350 (34%), Positives = 209/350 (59%), Gaps = 6/350 (1%)

Query: 201 LEQRTAREVALAQLLAQRLAWLSTLL--AVAVVVILAVSLRLLYRGS-AGPLAQATSMLA 257
           L+Q    + A AQ     ++ ++TL+    A+ ++L V +R   RG    PLA AT+   
Sbjct: 173 LQQSAVDQQASAQ---SNISLMTTLIIAVTALALLLVVGIRFALRGLIVQPLADATACFE 229

Query: 258 QLARGDLSDSAPVRARGQVAALLDALQRLRKAIVRLVKGVHAGAAAIQNAAGDMAAGTEH 317
           ++A GDLS++  V +R ++  L   ++R+++++  +VK VH+   +I   A ++A G   
Sbjct: 230 RIAAGDLSETINVFSRNEIGRLFAGIKRMQESMSTMVKAVHSSTESIDTGAREIAMGNTD 289

Query: 318 VVARTEEQAQALLQAAASMQQLAGTVQQHTAHTHQASRLARRACEVVRRSAAEVEQVASA 377
           +  RTE+QA +L + A+SM+QL GTV+Q+  +  QAS+LA  A ++  R    V QV + 
Sbjct: 290 LSQRTEQQAASLQETASSMEQLTGTVRQNAENARQASQLAVNASDIATRGGDVVGQVVTT 349

Query: 378 MAAIKASSARITDLGGLIDSIAVQSKLLGASASLAGCGSGVGGRTLSSVAQDVSALAQRT 437
           M  I +SS ++ D+ G+I+ IA Q+ +L  +A++    +G  GR  + VA +V +LAQR+
Sbjct: 350 MQDIASSSNKVVDIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRS 409

Query: 438 ASAAAEFKSLTETALQQIQNGSRKAVQAEGAMREAVYSVERVSQLIGQIAEVNLEQTSGI 497
           ASAA E K L   ++ ++Q+GS    +A   M E V +V RV+ ++G+I+  + EQ+ GI
Sbjct: 410 ASAAKEIKELIGDSVDKVQSGSALVGRAGTTMDEIVQAVRRVTDIMGEISAASEEQSGGI 469

Query: 498 DQVVQVLRQVQLLTQQNGLLLQQTTSAARALNEQTEQLTQAAAEFRLEAG 547
           +QV + + Q+  +TQQN  L++Q  +AA +L +QT QL      +++  G
Sbjct: 470 EQVNRAVVQMDEVTQQNAALVEQAAAAAASLEDQTRQLQAVVNGWKVAGG 519



 Score = 32.3 bits (72), Expect = 6e-05
 Identities = 52/238 (21%), Positives = 91/238 (38%), Gaps = 28/238 (11%)

Query: 228 VAVVVILAVSLRLLYRGSAGPLAQATSMLAQLARGDLSDSAPVRARGQVAALLDALQRLR 287
           + V+  +A    +L   +A   A+A     +  RG    +  VR+  Q +A   A + ++
Sbjct: 364 IGVIEGIAFQTNILALNAAVEAARA----GEQGRGFAVVAGEVRSLAQRSA--SAAKEIK 417

Query: 288 KAIVRLVKGVHAGAAAIQNAAGDMAAGTE----------HVVARTEEQAQALLQAAASMQ 337
           + I   V  V +G+A +  A   M    +           + A +EEQ+  + Q   ++ 
Sbjct: 418 ELIGDSVDKVQSGSALVGRAGTTMDEIVQAVRRVTDIMGEISAASEEQSGGIEQVNRAVV 477

Query: 338 QLAGTVQQHTAHTHQASRLARRACEVVRRSAAEVEQVASAMAAIKASSARITDLGGLIDS 397
           Q+    QQ+ A   QA+  A    +  R+  A V     A  A+  S+A           
Sbjct: 478 QMDEVTQQNAALVEQAAAAAASLEDQTRQLQAVVNGWKVAGGAVHNSAAATRSQSTASRV 537

Query: 398 IAVQSKLLGASASLAGCGSGVGGRTLSSVAQDVS------------ALAQRTASAAAE 443
            + +SK    +A  A    G      ++ +   S            AL  +TA AA+E
Sbjct: 538 TSSKSKPAAKAAPHASVNGGAAQPAANTASASASASHDAGAARVEPALKPKTARAASE 595