Pairwise Alignments

Query, 186 a.a., RNA polymerase sigma-E factor protein from Herbaspirillum seropedicae SmR1

Subject, 193 a.a., alginate biosynthesis protein AlgZ/FimS from Pseudomonas aeruginosa PA14

 Score = 82.0 bits (201), Expect = 6e-21
 Identities = 45/179 (25%), Positives = 89/179 (49%), Gaps = 10/179 (5%)

Query: 10  EQEDIDLIERIAQGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQ 69
           +++D  L+ER+ +GD+ AF+ L   Y  ++   + R V D   ++++  +     +    
Sbjct: 4   QEQDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDAQEAQDVAQEAFIKAYRALG 63

Query: 70  TYNGQSKVSTWIFAIAYKQGLKAL-SRVDTPVEMDMETMVSD---------ELVEPEHQL 119
            + G S   TW++ IA       L +R   P + D+    ++         ++  PE  +
Sbjct: 64  NFRGDSAFYTWLYRIAINTAKNHLVARGRRPPDSDVTAEDAEFFEGDHALKDIESPERAM 123

Query: 120 SETQLRRHIGGALERLSFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKL 178
              ++   +   +++L  + RT +TL  F G+SYE+IA  M C + TV++R+F AR+ +
Sbjct: 124 LRDEIEATVHQTIQQLPEDLRTALTLREFEGLSYEDIATVMQCPVGTVRSRIFRAREAI 182