Pairwise Alignments

Query, 186 a.a., RNA polymerase sigma-E factor protein from Herbaspirillum seropedicae SmR1

Subject, 197 a.a., RNA polymerase sigma factor RpoE from Dyella japonica UNC79MFTsu3.2

 Score = 91.3 bits (225), Expect = 1e-23
 Identities = 60/185 (32%), Positives = 97/185 (52%), Gaps = 14/185 (7%)

Query: 13  DIDLIERIAQGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQTYN 72
           D  L+ER+ +GD+ AF+ L R Y  ++   + R V +    E++  +     W    ++ 
Sbjct: 7   DSALVERVQKGDKRAFDLLVRKYQHKVIALISRYVNNYAECEDVAQEAFVRAWRAIGSFR 66

Query: 73  GQSKVSTWIFAIAY---KQGLKALSRVDTPVEMDMETMV----SDELVE---PEHQLSET 122
           G+S   TW++ IA    K  L AL R     ++ ++  V    SD + E   PE +L   
Sbjct: 67  GESAFYTWMYKIAVNTAKNHLVALGRRPPADDIAIDDAVFVPGSDRMQETATPERELLRQ 126

Query: 123 QLRRHIGGALERLSFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYAR----QKL 178
           ++ + +   ++ L  E RT +TL    G+SYEEIA+ MGC I TV++R+F AR    +KL
Sbjct: 127 EIEQTVFATVQALPEELRTAITLREVDGLSYEEIAEAMGCPIGTVRSRIFRAREAIDEKL 186

Query: 179 KVFLS 183
           +  LS
Sbjct: 187 RPLLS 191