Pairwise Alignments

Query, 186 a.a., RNA polymerase sigma-E factor protein from Herbaspirillum seropedicae SmR1

Subject, 199 a.a., RNA polymerase, sigma-24 subunit, RpoE from Paraburkholderia bryophila 376MFSha3.1

 Score = 97.4 bits (241), Expect = 1e-25
 Identities = 60/183 (32%), Positives = 94/183 (51%), Gaps = 13/183 (7%)

Query: 9   IEQEDID--LIERIAQGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWT 66
           + +++ID  L+ER+ +GD+ AFE L   Y  ++ + + RLV D    E++  D     + 
Sbjct: 1   VSEKEIDQVLVERVQKGDKAAFELLVSKYHRKILRLISRLVRDPAEVEDVAQDAFIKAYR 60

Query: 67  KAQTYNGQSKVSTWIFAIAYKQGLKALS----RVDTPVEMDMETMVS----DELVE---P 115
               + G+S   TW++ IA       L+    R  T  E D E   +    D+L +   P
Sbjct: 61  ALPQFRGESAFYTWLYRIAVNTAKNYLATQGRRAPTSTEADAEEAETFSDADQLRDINTP 120

Query: 116 EHQLSETQLRRHIGGALERLSFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYAR 175
           E  L   Q+   +  A+  L  E RT +TL    G+SYEEIA+ MGC I TV++R+F AR
Sbjct: 121 ESMLMSKQIAETVNAAMAVLPEELRTAITLREIEGLSYEEIAEMMGCPIGTVRSRIFRAR 180

Query: 176 QKL 178
           + +
Sbjct: 181 EAI 183