Pairwise Alignments

Query, 377 a.a., flagellar hook-filament junction protein from Herbaspirillum seropedicae SmR1

Subject, 422 a.a., flagellar hook-associated protein 3 from Pseudomonas stutzeri RCH2

 Score =  131 bits (330), Expect = 3e-35
 Identities = 116/438 (26%), Positives = 193/438 (44%), Gaps = 77/438 (17%)

Query: 1   MRISTQMIYQSSNNDLTSMQSQFL---KLSQQVTAQQRVLLPSDDPVAAARALDMQQTAD 57
           MRIST    Q+ NN +  +Q  +    +  +Q++   R+L P+DDPVA+ R L ++Q  +
Sbjct: 1   MRIST---VQAFNNGVAGLQRNYANATRTQEQISTGNRILTPADDPVASVRLLQLEQQQN 57

Query: 58  LNEQYKTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGN 117
           +  QY +N   A ++L+  +  L S+  +L +++   + AGN   S  +R ++A+E+   
Sbjct: 58  VLSQYNSNLTAAKNSLTQEEVTLNSVNTVLQRVRELAVQAGNGGLSADDRKSIAAELTER 117

Query: 118 LAEVLGYANAQDGQGNYLFAGFKSTTQPFTLDGTGGVVYNGDQGAMSLQVDSTRVMDISA 177
             E+L   N ++ +G YLF+GF+  TQPF  DG G   Y GD+G   LQ+ S+  + IS 
Sbjct: 118 EDELLSLMNTRNARGEYLFSGFQGKTQPFVRDGAGSYSYQGDEGQRKLQIASSLNIAISD 177

Query: 178 SGQAIFQG--------NGQDIFKTMNNFINVLSVPVTEAANKADETA-ANNFVYP-AGSG 227
           SG++IF+         +  DI     + + V S P+ +     DE A + N  +P AG G
Sbjct: 178 SGKSIFENVTNAGRYLSSLDITGQPGSTLRV-STPLVQ-----DEVAISGNPPFPAAGVG 231

Query: 228 L-----TPIAAYKTSLAQLNALSPTDP-------------------TYQAVFTATAALKL 263
           +     T    Y  + A   A  P DP                    ++ V      + +
Sbjct: 232 VRFTSDTEYVVYDLAAAPDFANPPIDPNLVLASGVVDQQEKTTEKLVFRGVVVQFDGIPV 291

Query: 264 QSDAADAARTPVVGSQ--------------------AALTRNLASFNTQIDSLLSNVTTA 303
             +  +    P V  Q                    A +   +A   T +D  + +V  A
Sbjct: 292 GGETVEVQLDPAVQKQGILETISNLRKALEDPSSGNAGVRDAVAVALTNLDHGMISVDAA 351

Query: 304 KASIGARQNELDNLDAAGE----VNKENYTQTINNLLGRNPSDVNQLISDYTLTQTYLSA 359
           + +IGAR N ++      E    VNK    +           D  + +S  +     L A
Sbjct: 352 RGNIGARLNVIETTQTDNEDVTLVNKAVQAEL-------RELDYAEALSRLSFQTIILEA 404

Query: 360 AQKVFVTTSGLSLLNYLK 377
           AQ+ +V  SGL+L N ++
Sbjct: 405 AQQSYVKISGLNLFNAMR 422