Pairwise Alignments

Query, 244 a.a., flagellar biosynthesis sigma factor from Herbaspirillum seropedicae SmR1

Subject, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

 Score = 78.6 bits (192), Expect = 3e-19
 Identities = 59/236 (25%), Positives = 118/236 (50%), Gaps = 15/236 (6%)

Query: 5   KGKKGKNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETHGAQF 64
           K ++ K +++E +  LV  +A +   +    ++  DLIQ G +GL+ AV+++E   G +F
Sbjct: 383 KARRAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 439

Query: 65  ETYAV----QRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQH 120
            TYA     Q I  ++ D+ R+   +P  + +   K+    + +LQ++GR+P   ELA+ 
Sbjct: 440 STYATWWIRQAITRSIADQARTIR-IPVHMIETINKLNRISRQMLQEMGREPLPEELAER 498

Query: 121 MQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFREA 180
           MQ+  +  + +L +     +       DD+    H  D  + +  + PL +      + A
Sbjct: 499 MQMPEDKIRKVL-KIAKEPISMETPIGDDE--DSHLGDFIEDTTLELPLDSATATSLKAA 555

Query: 181 VVDSIKALPEREQILMALYYEQEMN----LKEIGAVMGVSESRVCQLHSQAISRMR 232
             D +  L  RE  ++ + +  +MN    L+E+G    V+  R+ Q+ ++A+ ++R
Sbjct: 556 TRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611