Pairwise Alignments

Query, 244 a.a., flagellar biosynthesis sigma factor from Herbaspirillum seropedicae SmR1

Subject, 246 a.a., RNA polymerase sigma factor, FliA/WhiG family from Dechlorosoma suillum PS

 Score =  277 bits (708), Expect = 2e-79
 Identities = 136/233 (58%), Positives = 180/233 (77%), Gaps = 2/233 (0%)

Query: 1   MYNVKGKKGKNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETH 60
           MYN  G+  K  L+++ APLVK++A+ L A+LP SV+V+DL+Q GM+GLLDA+NR+E  H
Sbjct: 1   MYNAAGQLDKEQLVQRFAPLVKRIAYHLMARLPSSVQVEDLVQNGMIGLLDAMNRFETGH 60

Query: 61  GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQH 120
           GAQFETYA QRIRGAMLD LR +DWLPR +R++ R++E+A+  L Q+ GR P E ELA+ 
Sbjct: 61  GAQFETYAAQRIRGAMLDGLRENDWLPRGLRRDLRRIEQAITQLEQEHGRVPTEKELAEA 120

Query: 121 MQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFREA 180
           M +SL DYQ +L E  GHQL+Y+EDF ++  G E FL+RH T    DPL+ L     R+ 
Sbjct: 121 MDMSLADYQKMLGEARGHQLLYFEDFTEE--GEEGFLERHLTDHDADPLRLLEEQSLRQT 178

Query: 181 VVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRS 233
           +V SI  LPERE+++MALYYEQ++NL+EIG VMGV+ESRVCQLHSQAI+R+R+
Sbjct: 179 LVASIGELPEREKLMMALYYEQDLNLREIGEVMGVTESRVCQLHSQAIARLRA 231