Pairwise Alignments

Query, 244 a.a., flagellar biosynthesis sigma factor from Herbaspirillum seropedicae SmR1

Subject, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

 Score = 78.2 bits (191), Expect = 4e-19
 Identities = 60/236 (25%), Positives = 115/236 (48%), Gaps = 15/236 (6%)

Query: 5   KGKKGKNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETHGAQF 64
           K ++ K ++ E +  LV  +A +   +    ++  DLIQ G +GL+ AV+++E   G +F
Sbjct: 411 KARRAKREMTEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 467

Query: 65  ETYAV----QRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQH 120
            TYA     Q I  ++ D+ R+   +P  + +   K+    + +LQ+ G +P  A LA  
Sbjct: 468 STYATWWIRQAITRSIADQARTIR-IPVHMIETINKMNRISRQILQETGAEPDPATLAIK 526

Query: 121 MQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFREA 180
           M++  E  + +L +     +       DDD    H  D  + + +  P+   +  G RE 
Sbjct: 527 MEMPEEKIRKIL-KISKEPISMETPIGDDD--DSHLGDFIEDTATTAPVDAALYSGLREV 583

Query: 181 VVDSIKALPEREQILMALYYEQEMN----LKEIGAVMGVSESRVCQLHSQAISRMR 232
             + +  L  RE  ++ + +  EMN    L+E+G    V+  R+ Q+ ++A+ ++R
Sbjct: 584 TKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 639