Pairwise Alignments

Query, 244 a.a., flagellar biosynthesis sigma factor from Herbaspirillum seropedicae SmR1

Subject, 472 a.a., RNA polymerase sigma factor from Bifidobacterium breve UCC2003

 Score = 84.0 bits (206), Expect = 5e-21
 Identities = 68/235 (28%), Positives = 115/235 (48%), Gaps = 15/235 (6%)

Query: 6   GKKGKNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETHGAQFE 65
           GKK K+ LLE +  LV  LA +   +    +   DLIQ G +GL+ AV +++   G +F 
Sbjct: 231 GKKAKDHLLEANLRLVVSLAKRYTGR---GMLFLDLIQEGNLGLIRAVEKFDWKKGFKFS 287

Query: 66  TYAV----QRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQHM 121
           TYA     Q I  AM D+ R+   +P  + +   K+    + +LQ LGR+P   ELA+ +
Sbjct: 288 TYATWWIRQAITRAMADQARTIR-VPVHMVEVINKLSRVQRQMLQDLGREPTPDELAREL 346

Query: 122 QISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFREAV 181
            + +E  Q  + + G   +  +    +D  G   F D  + +D+  P   +     +E  
Sbjct: 347 DMPVEKVQE-VQKYGREPISLHTPLGED--GDSEFGDLIEDTDAIAPSDAVAFSLLQEQF 403

Query: 182 VDSIKALPEREQILMALYY----EQEMNLKEIGAVMGVSESRVCQLHSQAISRMR 232
              ++ L  RE  ++ + Y     Q   L +IG V GV+  R+ Q+ S+ +S++R
Sbjct: 404 KQVLETLSPREAGVIKMRYGLEDGQPKTLDDIGRVYGVTRERIRQIESKTMSKLR 458