Pairwise Alignments

Query, 244 a.a., flagellar biosynthesis sigma factor from Herbaspirillum seropedicae SmR1

Subject, 237 a.a., flagellar biosynthesis sigma factor (RefSeq) from Shewanella sp. ANA-3

 Score =  200 bits (509), Expect = 2e-56
 Identities = 101/227 (44%), Positives = 159/227 (70%), Gaps = 5/227 (2%)

Query: 10  KNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETHGAQFETYAV 69
           K  ++EQ+APLVK++AH L A+LP SV++DDL+QAGMMGLL+A ++++   GA+FET+A 
Sbjct: 13  KTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETFAG 72

Query: 70  QRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQHMQISLEDYQ 129
            RIRGAMLDE+R  DW+PRS+ +N R+V +A+  L Q LGR  ++ E+A+ + ++L++Y 
Sbjct: 73  IRIRGAMLDEIRRGDWVPRSVHRNNRRVAQAIDELEQVLGRDARDTEIAEKLDMTLDEYH 132

Query: 130 SLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFREAVVDSIKALP 189
            +L++    ++I  ED      G    +     + SD   + L    F  A+V++IK LP
Sbjct: 133 HILNDVSVGKIIGIEDL-----GVSQDILTSSDNVSDGTYEALAETQFHSALVEAIKLLP 187

Query: 190 EREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLR 236
           ER+ ++++LYY++ +NLKEIGA++ VSESRV Q+ SQA+ R++  L+
Sbjct: 188 ERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKLK 234