Pairwise Alignments

Query, 358 a.a., glycoside hydrolase family 43 from Herbaspirillum seropedicae SmR1

Subject, 330 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  106 bits (264), Expect = 1e-27
 Identities = 86/311 (27%), Positives = 148/311 (47%), Gaps = 26/311 (8%)

Query: 14  LLVVLAAVGWTGWAWWRDADAPAGLVSSNGRLEATEVDIGSRLGGRIRHMLVDEGEAVQA 73
           LL V+A V   G+   R      G     G+ E TE  + S++ GRI    V EG++V A
Sbjct: 18  LLGVIAIVAVVGFFMLRK-----GPEIIQGQAEVTEYRVSSKVPGRILEFRVKEGQSVNA 72

Query: 74  GQVLAYLQVDSLHAQLREARAQQQRASQGVTVAQAQLAMRRSEQRIAQALTVQRHKSLSA 133
           G  LA L+   + A++ +ARA +  A      AQ + A++ + +   QA      K+ + 
Sbjct: 73  GDTLAILEAPDVVAKMEQARAAEAAAQ-----AQNEKAIKGAREEQIQAAYEMWQKAQAG 127

Query: 134 AT---RRVERSQPLGRMQALTAQEVDDEENTLAEARAQLDAAQAQEEGARAAIRAAE--- 187
            T   +  +R + L     + AQ++D       E  AQ DAA A E+ A+A    A+   
Sbjct: 128 VTIAEKSYKRVKNLYEQGVMPAQKLD-------EVTAQRDAAIATEKAAKAQYTMAKNGA 180

Query: 188 --ADVASARALLEAAQAATARIEADLEESAIRAPRDGHIQYRLAQAGEVVSEGSKLLNLI 245
              D  +A AL+  A+ A A +E+ ++E+ + AP  G +     + GE+V  G+ ++N+ 
Sbjct: 181 EREDKMAAEALVNRAKGAVAEVESYIKETYLIAPAAGEVSEIFPKVGELVGTGAPIMNIA 240

Query: 246 DLSDLHMHFFLPAELAGKVRLGQEVRVVLDAAPTDALPARITYVSRQAQFTP-KAVETAN 304
           +L+D+ + F +  +L   + +G E   V+ A     +  ++ Y+     +   KA +T  
Sbjct: 241 ELNDMWVTFNVREDLLKNLTMGAEFEAVVPALDNKTVKLKVYYLKDLGTYAAWKATKTTG 300

Query: 305 ERQKLMFRVKA 315
           +     F VKA
Sbjct: 301 QFDLKTFEVKA 311