Pairwise Alignments

Query, 358 a.a., glycoside hydrolase family 43 from Herbaspirillum seropedicae SmR1

Subject, 304 a.a., conserved hypothetical protein, putative membrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 94.4 bits (233), Expect = 4e-24
 Identities = 85/338 (25%), Positives = 157/338 (46%), Gaps = 55/338 (16%)

Query: 18  LAAVGWTGWAWWRDADAPAGL--VSSNGRLEATEVDIGSRLGGRIRHMLVDEGEAVQAGQ 75
           +  +G  G A W  +    G     + G  EATEV + +   G++  + V+EG  ++AG+
Sbjct: 4   MTKIGIYGMAVWMLSACGNGTPDYDATGTFEATEVIVSAEAAGKLLQLEVEEGTRLKAGE 63

Query: 76  -------VLAYLQVDSLHAQLREARAQQQRASQGVTVAQAQLAMRRSEQRIAQALTVQRH 128
                  V  YL+   L A ++   +Q+   ++ +   + Q+             T QR 
Sbjct: 64  EVGLVDTVQLYLKKLQLEASMKSVESQRPDLAKQIAATKQQIT------------TAQRE 111

Query: 129 KSLSAATRRVERSQPLGRMQALTAQEVDDEENTLAEARAQLDAAQAQEEGARAAIRAAEA 188
           K      +RVE     G   A   +++DD +  +   + QL A ++             +
Sbjct: 112 K------KRVENLLAAG---AANQKQLDDWDAQVTLLQQQLIAQES-------------S 149

Query: 189 DVASARALLEAAQAAT---ARIEADLEESAIRAPRDGHIQYRLAQAGEVVSEGSKLLNLI 245
            + S  +L E   + +   A++E  L +  I++P +G +  + A+ GE+ S G  L  + 
Sbjct: 150 LMKSTNSLTEQGNSVSIQVAQVEDQLNKCHIQSPIEGTVLAKYAEGGELASVGKPLFKVG 209

Query: 246 DLSDLHMHFFLPAELAGKVRLGQEVRVVLDAAPTD--ALPARITYVSRQAQFTPKAVETA 303
           ++  +++  ++ +E   +V+LG +V V  D   ++  A P  +T++S +++FTPK + T 
Sbjct: 210 EVDRMYLRAYVTSEQLSQVKLGDKVTVYSDYGNSEQKAYPGVVTWISDRSEFTPKTILTK 269

Query: 304 NERQKLMFRVKAQLTPSSRGSIAPHLKAGM-PGVAWIK 340
           NER  L++ VK  +   + GS    LK GM  GV W K
Sbjct: 270 NERANLVYAVK--IAVKNDGS----LKIGMYGGVVWKK 301