Pairwise Alignments

Query, 356 a.a., NADH:ubiquinone oxidoreductase subunit H from Herbaspirillum seropedicae SmR1

Subject, 332 a.a., respiratory-chain NADH dehydrogenase subunit 1 (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 92.0 bits (227), Expect = 2e-23
 Identities = 83/287 (28%), Positives = 133/287 (46%), Gaps = 17/287 (5%)

Query: 63  RVGPAGLLQPIADAVKLIFKEISTPSKANKALFYLAPVMTIMPALAAWAVVPFSPEHVLA 122
           RVGP  L+QP  D  KL  KE   P+ AN+A F LAP++ +       A++P        
Sbjct: 52  RVGPP-LIQPYLDIAKLFTKETVMPASANRAAFLLAPLLGLTGMAVCAALLPVPGVSGGL 110

Query: 123 NVNAGLLYLMAITSMEVYGIIIAGWASNSKYAFLGAMRASAQMVSYEISMGFCLVVVLMV 182
                LL +  +  +    +++ G AS+S +  +G  R    M +YE+ +   L V+L V
Sbjct: 111 PAMGDLLVIFYLLPLPAIALMVGGSASSSPFGAMGFSREMTLMFAYEMPL---LAVMLAV 167

Query: 183 SGSLNMTDIVMGQTQGHFASMGLNFLSWNWLPLLPIFV------IYFVSGVAETNRHPFD 236
           +  + M     G  +   A++    L+   L L P+ +      + F+ G   T   PFD
Sbjct: 168 AMKVGMA--TGGGAEFSLANIVDYQLANGQLALDPVMIPALLAYLLFLPGTMGTV--PFD 223

Query: 237 VVEGESEIVAGHMIEYSGMSFAMFFLAEYAAMILISILTALLFFGGWSAPVSALDFIPGW 296
           V E E+EI+ G ++EYSG + A F +A     +++  L   LF  G + P   +  IP W
Sbjct: 224 VPEAETEIIEGPLLEYSGPALAFFHIASALKTVVVLGLGVALFLPG-TVPGGIVANIP-W 281

Query: 297 IWLGLKTFFFLSLYVWIRASFPRYRYDQIMRLGWKVFIPLTLVWLVV 343
             L       +SL + ++++  R+R DQ      K    L L  LV+
Sbjct: 282 FVLKCAALMAVSLTL-VKSATGRFRVDQAFTFYLKYPSVLALASLVL 327