Pairwise Alignments

Query, 294 a.a., hypothetical protein from Herbaspirillum seropedicae SmR1

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score = 92.0 bits (227), Expect = 3e-23
 Identities = 64/200 (32%), Positives = 97/200 (48%), Gaps = 6/200 (3%)

Query: 16  DTEFAAIALVKQVREIHEAAAALVRYLDQSSLQSAALEREIDGGMEKISSISTFIRELPD 75
           +T+  A A+ +    + E A    R  + +S      + E   G E ++     I +L  
Sbjct: 280 ETDQVATAINQMAASVQEVANNAQRTAEAAS----RADSETATGTEVVNRTGAAIGQLAQ 335

Query: 76  RIRQDMDAIHEASREIQELGKLVSMIKQIGRQTELLALNAAIEAARAGDAGRGFAVVAAE 135
            I+Q  D IHE      ++ K++ +I+ I  QT LLALNAAIEAARAG+ GRGFAVVA E
Sbjct: 336 DIQQAGDVIHELEAHSNDITKVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADE 395

Query: 136 VRNLAISATQAANVIDE--GLKKAQQKVDTGLQFRFLDESAQQLSEAAMLAESTQLLRQR 193
           VRNLA    Q+   I+   G  +   +    +  R  +++ Q +  AA  A S   +  R
Sbjct: 396 VRNLASRTQQSTQEINGMIGALQGGARQAVEVMQRSREQAMQSVEHAAQAARSLHGINSR 455

Query: 194 YEEVRQFYKSAFSVVSSHDA 213
             E+ +  +   + V    A
Sbjct: 456 VTEISEMSQQIAAAVEQQSA 475