Pairwise Alignments

Query, 837 a.a., chemotaxis protein CheA from Herbaspirillum seropedicae SmR1

Subject, 723 a.a., Chemotaxis protein histidine kinase and related kinases from Pseudomonas stutzeri RCH2

 Score =  312 bits (800), Expect = 4e-89
 Identities = 198/625 (31%), Positives = 334/625 (53%), Gaps = 50/625 (8%)

Query: 252 EYFRYVPDQVELTQLAAQWLAPAPESAERASAGAHAEP------AQDPIDAVMAEIFAIQ 305
           E F  V ++VE T  + + LA     AE ASA   A P      A+  ++AV AE   + 
Sbjct: 101 EMFGQVRERVEPTPASRELLAALARLAEPASADEPAVPMEPAPVAEPQVEAVDAEFEQML 160

Query: 306 RQILQSEAN------MGWQDGRTQAVASTLMNCCRSIGNLELIG-----ELEIARQQSLQ 354
             +  S++        G  D  T     +L++     G   +       E E+    +  
Sbjct: 161 AAVQSSDSEPAAAQVSGGGDEITDDEFESLLDQLHGKGQFSVSAASAAPEPEVVVAPASD 220

Query: 355 LRSCDPLLAWLNANPLPLQRGPVASVASVASAEAGA------EAAEAVAVEVRQESLPQP 408
             + D   A L+      +  PV S ++  +  A A       A++ +  +  +  L Q 
Sbjct: 221 EITDDEFEALLDQLHGKGKFEPVGSTSTEPATPAAAAPASNTSASDEITDDEFEALLDQL 280

Query: 409 EALSRQEPP--QVQPPAPPLRESLPEESGRAGRRAEESLSGNK---------------SV 451
               + EP   +V P  P   E  PE +  A  +A  + + +K               +V
Sbjct: 281 HGKGKFEPAVAEVAPAVPSKPEPKPEAARAAPAKAAPAAAVSKPAAVVAEKAPAEAETTV 340

Query: 452 KVEQVKIDRLMNLIGEMVVSKNALPYLAQRAEDQFGVRELAREIKAQYAVINRIAEEMQD 511
           +V+  ++D +MN++GE+V+ +N L  L   + D+   + ++         ++ +  ++Q 
Sbjct: 341 RVDTARLDEIMNMVGELVLVRNRLVRLGSNSGDEAMAKAVSN--------LDVVTADLQS 392

Query: 512 AIMQVRMMPVSVVFQRFPRLVRDISRKLGKEVQLVLVGEETEADKNIIEALADPLIHIVR 571
           A+M+ RM P+  VF RFPRLVRD++R L KE+ L LVGEET+ DKN++EALADPL+H+VR
Sbjct: 393 AVMKTRMQPIKKVFGRFPRLVRDLARSLKKEINLELVGEETDLDKNLVEALADPLVHLVR 452

Query: 572 NSLDHGLEGPEQRRASGKPALGSLTISAAHEGDQVVIVIEDDGKGIDPALIKRKAYEKGL 631
           N++DHG+E PE+R A+GKP  G + +SA  EGD ++++I DDGKG+D  +++ KA EKG+
Sbjct: 453 NAVDHGIEMPEEREAAGKPRTGRVVLSAEQEGDHILLIISDDGKGMDANVLRAKAVEKGM 512

Query: 632 IDEAQLERISDQDAVNLVFSSGFSTAEVVSDLSGRGVGMDVVRNAVEKVNGSLALHSVSG 691
           +++   +R+SD +  NL+F+ GFST   +SD+SGRGVGMDVV+  + ++NG++ + S  G
Sbjct: 513 LEKDAADRLSDLECYNLIFAPGFSTKTEISDVSGRGVGMDVVKTKISQLNGTVNVFSTKG 572

Query: 692 KGTRLQISLPLSMAVTKVMIIESDGQLFGVPMEHVMETVRVPRSSLHFANSSAKMVLRGH 751
           +G+R+ I +PL++A+   +++    Q F  P+ +V E   +  S  +  +    +++R  
Sbjct: 573 QGSRVVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNEIFHLDLSRTNVVDGQEVVIVRDK 632

Query: 752 ILGLKGINQILGIAAEQKTNADGEVAVLVVRVGGQSVGLVIDDFRETVDVIQKPLLGILG 811
            L L  + + L  +A ++   +G V +L   VG QS+G V+D      +V+ KPL  +L 
Sbjct: 633 ALPLFYLKRWLIQSAAEEEQREGHVVIL--SVGNQSIGFVVDQLVGQEEVVIKPLGKMLQ 690

Query: 812 GLSLYSGSALMGDGSVLMVLNTREM 836
           G    SG+ + GDG + ++L+   M
Sbjct: 691 GTPGMSGATITGDGRIALILDVPSM 715



 Score = 65.5 bits (158), Expect = 1e-14
 Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 12/183 (6%)

Query: 3   LLRDQFILETRDLLQGISEKLMQLEDAPEHVELLESLFRMVHTLKGNSGLFDVPEMTRVL 62
           +L+D F++E  ++L+ +SE+L++LE +P+ + LL ++FR  HT+KG +G   + E+    
Sbjct: 9   ILQD-FLVEAGEILELLSEQLVELESSPDDMALLNAIFRGFHTVKGGAGFLQLHELVECC 67

Query: 63  HACEDLMDAVRRRQVAYSEVLADRLLDAMDFVAMLCDGLEMEAEQADPHAQEAVQIASSL 122
           H  E++ D +R+ +      L D +L A+D V  +  G   E  +  P ++E   + ++L
Sbjct: 68  HIAENVFDILRKGERRVDSELMDVVLQALDSVNEMF-GQVRERVEPTPASRE---LLAAL 123

Query: 123 RQLIGEHAGVESAVG-DLARIGDAQDRGAAIVAAPAAGQALPLRAIPEPLRRQAFAQAQA 181
            +L    +  E AV  + A + + Q      V A  A     L A+       A AQ   
Sbjct: 124 ARLAEPASADEPAVPMEPAPVAEPQ------VEAVDAEFEQMLAAVQSSDSEPAAAQVSG 177

Query: 182 GGE 184
           GG+
Sbjct: 178 GGD 180