Pairwise Alignments

Query, 837 a.a., chemotaxis protein CheA from Herbaspirillum seropedicae SmR1

Subject, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

 Score =  285 bits (729), Expect = 7e-81
 Identities = 157/458 (34%), Positives = 276/458 (60%), Gaps = 13/458 (2%)

Query: 380 VASVASAEAGAEAAE---AVAVEVRQESLPQPEALSRQEPPQVQPPAPPLRESLPEESGR 436
           +A + S EA A   +   A A  ++     Q E ++  + P V+PP   +   +      
Sbjct: 249 IAPILSDEASAHVEDEQAAPAATLQSNPQTQVEPVAIVDLPAVEPPVATVAPVIANPKES 308

Query: 437 AGRRAEESLSGNKSVKVEQVKIDRLMNLIGEMVVSKNALPYLAQRAEDQFGVRELAREIK 496
           A  +  ++ S   S++V+  K+D L+NL+GE+V++++ L  L     + F + +L + +K
Sbjct: 309 ATNKPAKTDSSVSSIRVDIEKVDNLINLVGELVITQSMLTELG----NDFSMDKLDK-LK 363

Query: 497 AQYAVINRIAEEMQDAIMQVRMMPVSVVFQRFPRLVRDISRKLGKEVQLVLVGEETEADK 556
           A  A + + ++++Q+ ++ +RM+P+S  F RFPRLVRD+  +LGK+V L + GE+TE DK
Sbjct: 364 AGLAQLLQNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTELDK 423

Query: 557 NIIEALADPLIHIVRNSLDHGLEGPEQRRASGKPALGSLTISAAHEGDQVVIVIEDDGKG 616
            ++E + DPL+H+VRN +DHG+E P+ R A GKP  G +T+ A H+G  +++ I DDG G
Sbjct: 424 TVLERIVDPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISDDGAG 483

Query: 617 IDPALIKRKAYEKGLID-EAQLERISDQDAVNLVFSSGFSTAEVVSDLSGRGVGMDVVRN 675
           ID   + RKA EKG+++ + Q   ++D+  +NL+F+ GFSTAE VSD+SGRGVGMDVVR 
Sbjct: 484 IDCDKLWRKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMDVVRR 543

Query: 676 AVEKVNGSLALHSVSGKGTRLQISLPLSMAVTKVMIIESDGQLFGVPMEHVMETVRVPRS 735
            +E++ G + + S  G+G+R  ISLPL++A+    +++   Q++ +P+  ++E++++  +
Sbjct: 544 NIEELGGQIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTIVESIQINTA 603

Query: 736 SL-HFANSSAKMVLRGHILGLKGINQILGIAAEQKTNADGEVAVLVVRVGGQSVGLVIDD 794
           S+ H A       LR   + +  +   L +    ++ +  +  +  V   G  VGL++DD
Sbjct: 604 SVKHAAGGIELYRLREENIPILRLQDELAMG---RSGSLEKRLICFVESAGHRVGLLVDD 660

Query: 795 FRETVDVIQKPLLGILGGLSLYSGSALMGDGSVLMVLN 832
             +   V+ K L      ++  SG+ ++GDGSV ++L+
Sbjct: 661 LLDQQQVVIKSLESNYAKVAGISGATILGDGSVSLILD 698



 Score = 80.9 bits (198), Expect = 2e-19
 Identities = 85/370 (22%), Positives = 157/370 (42%), Gaps = 39/370 (10%)

Query: 1   MTLLRDQFILETRDLLQGISEKLMQLEDAPEHVELLESLFRMVHTLKGNSGLFDVPEMTR 60
           M  LR  F +E R+ L+ +  +L+QL+ +   +E+L ++FR  H++KG +G F++ E++ 
Sbjct: 5   MEQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISE 64

Query: 61  VLHACEDLMDAVRRRQVAYSEVLADRLLDAMDFVAMLCDGLEMEAEQADPHAQEAVQIAS 120
             HA E  +D +R ++   +    D LL + D +  + D  E E    +   Q   Q+ +
Sbjct: 65  FTHAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQ---QVGA 121

Query: 121 SLRQLIGEHAGVESAVGDLARIGDAQDRGAAIVAAPAAGQALPLRAIPEPLRRQAFAQAQ 180
            L+ L+                    D+GA  V + A  Q +        +   A A   
Sbjct: 122 ELQALLA-------------------DQGADRVMSQA--QPVSSNTHTSNMHADAIAIPD 160

Query: 181 AGGELHWIAYRPSRECFFQGDDPFHRAREVP--GFIWGRIEAPAAWPPLAELNAYDCVLH 238
           A  +   I + P    F+ G+DP    RE+   G  +       A P LAE++   C L 
Sbjct: 161 ATAQGWRIRFVPHETLFYSGNDPLRILRELRELGSEYQIELDHQALPELAEIDPELCYLS 220

Query: 239 F--QIVAAASQAELMEYFRYVPDQVEL---------TQLAAQWLAPAPESAERASAGAHA 287
           +  ++    S+ ++ E F +V D+ +L              +    AP +  +++     
Sbjct: 221 WTIRLTGDVSENDVRELFDWVEDECDLHIAPILSDEASAHVEDEQAAPAATLQSNPQTQV 280

Query: 288 EP-AQDPIDAVMAEIFAIQRQILQSEANMGWQDGRTQAVASTLMNCCRSIGNL-ELIGEL 345
           EP A   + AV   +  +   I   + +   +  +T +  S++      + NL  L+GEL
Sbjct: 281 EPVAIVDLPAVEPPVATVAPVIANPKESATNKPAKTDSSVSSIRVDIEKVDNLINLVGEL 340

Query: 346 EIARQQSLQL 355
            I +    +L
Sbjct: 341 VITQSMLTEL 350