Pairwise Alignments

Query, 837 a.a., chemotaxis protein CheA from Herbaspirillum seropedicae SmR1

Subject, 695 a.a., putative CheA signal transduction histidine kinase (RefSeq) from Shewanella amazonensis SB2B

 Score =  274 bits (700), Expect = 1e-77
 Identities = 155/417 (37%), Positives = 253/417 (60%), Gaps = 13/417 (3%)

Query: 417 PQVQPPAPPLRESLPEESGRAGRRAEESLSGNKSVKVEQVKIDRLMNLIGEMVVSKNALP 476
           PQVQ  A     +  ++S  A +  E S     S++V   KID L+N++GE+V+++  L 
Sbjct: 273 PQVQALATDKAVASQKQSAAAAKSGESS-----SIRVSTEKIDMLINMVGELVITQAMLG 327

Query: 477 YLAQRAEDQFGVRELAREIKAQYAVINRIAEEMQDAIMQVRMMPVSVVFQRFPRLVRDIS 536
            + Q+ E       L ++   Q A   R   ++Q+++MQ+RM+P+S  F RFPRLVRDI 
Sbjct: 328 QIGQQDEINQESLLLLQQGLEQLASHTR---DLQESVMQIRMLPISFAFNRFPRLVRDIG 384

Query: 537 RKLGKEVQLVLVGEETEADKNIIEALADPLIHIVRNSLDHGLEGPEQRRASGKPALGSLT 596
           ++LGK+V+L+L GE+TE DK ++E + DP++H+VRNSLDHGLE PE R A GK   G++ 
Sbjct: 385 QQLGKKVELILKGEDTELDKTVLEKIVDPMVHLVRNSLDHGLESPEARLAQGKSETGTIM 444

Query: 597 ISAAHEGDQVVIVIEDDGKGIDPALIKRKAYEKGLIDEAQLERISDQDAVNLVFSSGFST 656
           ++A H+G  ++I I DDG G++   I  KA +KGL+     E +S++    L+F  GFST
Sbjct: 445 LNAYHQGGCIIIEIADDGAGLNTHKILEKARQKGLVGAE--EELSEEAIHQLIFRPGFST 502

Query: 657 AEVVSDLSGRGVGMDVVRNAVEKVNGSLALHSVSGKGTRLQISLPLSMAVTKVMIIESDG 716
           A+ VSDLSGRGVGMDVV+  + ++NGS+ L S +GKG+R  I LPL++A+    +I    
Sbjct: 503 ADAVSDLSGRGVGMDVVKRNIHELNGSIELKSEAGKGSRFTIRLPLTLAILDGQLIRIGK 562

Query: 717 QLFGVPMEHVMETVRVPRSSLHFANSSAKMV-LRGHILGLKGINQILGIAAEQKTNADGE 775
            ++ VP+  + E+++VP + ++  +   +++ LR   L +  + +     A+ +   DG 
Sbjct: 563 HIYVVPLVSIYESLQVPTNRINRLSDGHELIRLRDEYLPVIKMYREFNHDADAREIKDG- 621

Query: 776 VAVLVVRVGGQSVGLVIDDFRETVDVIQKPLLGILGGLSLYSGSALMGDGSVLMVLN 832
             V+VV    +  GL++D+      V+ K L      +   SG+ ++GDG+V ++++
Sbjct: 622 -LVMVVDHNNEKAGLLVDELLAQQQVVIKSLEENYTRIPGISGATILGDGTVALIID 677



 Score = 52.0 bits (123), Expect = 1e-10
 Identities = 82/373 (21%), Positives = 147/373 (39%), Gaps = 67/373 (17%)

Query: 8   FILETRDLLQGISEKLMQLEDAPEHVELLESLFRMVHTLKGNSGLFDVPEMTRVLHACED 67
           F  E+ + L  +  +L++L+ A    E + ++FR  H++KG S  F   ++    H  E 
Sbjct: 12  FFEESIEGLAIMESELLKLDVAAPDPETINTIFRAAHSIKGGSATFGFMQVANYTHLLET 71

Query: 68  LMDAVR--RRQVAYSEVLADRLLDAMDFVAMLCDGLEMEAEQADPHAQE-AVQIASSLRQ 124
           L+D +R  RRQ+    V  D LL ++D +  + + L  +AE  DP   E  +++ ++L  
Sbjct: 72  LLDEIRDGRRQMQPDHV--DMLLLSVDLLRGMFEALMSQAEFNDPKLPELELRLNNTL-- 127

Query: 125 LIGEHAGVESAVGDLARIGDAQDRGAAIVAAPAAGQALPLRAIPEPLRRQAFAQAQAGGE 184
                                            A Q    ++I  P   QA   A     
Sbjct: 128 ---------------------------------ANQPSQTQSISPP---QA-TMASDSKT 150

Query: 185 LHW-IAYRPSRECFFQGDDPFHRAREV--PGFIWGRIEAPAAWPPLAELNAYDCVLHF-- 239
           L W I ++   +    G+DP     E+   G +   +  P ++P   + +   C LH+  
Sbjct: 151 LCWQIDFKAGADIMRCGNDPMLMFAELASKGTLTAEL-LPVSFPAWDDFDPEACYLHWRL 209

Query: 240 QIVAAASQAELMEYFRYVPDQVELT--QLAA--------QWLAPAPESAERASAGAHAEP 289
           +++      +L E F +V D+ E++  Q AA        + L+P+P+S       A    
Sbjct: 210 RLITDEPLEKLKEVFEWVEDECEISYQQTAAAPSADTSTEMLSPSPQSEVDPPVAAPDVI 269

Query: 290 AQDPIDAVMAEIFAIQRQILQSEANMGWQDGRTQAVASTLMNCCRSIGNLEL-------I 342
           A  P    +A   A+  Q   + A    +    +     +      +G L +       I
Sbjct: 270 ALTPQVQALATDKAVASQKQSAAAAKSGESSSIRVSTEKIDMLINMVGELVITQAMLGQI 329

Query: 343 GELEIARQQSLQL 355
           G+ +   Q+SL L
Sbjct: 330 GQQDEINQESLLL 342