Pairwise Alignments

Query, 837 a.a., chemotaxis protein CheA from Herbaspirillum seropedicae SmR1

Subject, 862 a.a., CheA Signal Transduction Histidine Kinases (STHK) (NCBI) from Rhodospirillum rubrum S1H

 Score =  549 bits (1414), Expect = e-160
 Identities = 355/892 (39%), Positives = 491/892 (55%), Gaps = 98/892 (10%)

Query: 7   QFILETRDLLQGISEKLMQLEDAPEHVELLESLFRMVHTLKGNSGLFDVPEMTRVLHACE 66
           +F+ E RDLLQ  +  L+ LE  P     L  +FR VHTLKG+ GLFD P  T+++HA E
Sbjct: 8   RFLSEARDLLQTAASGLLALEKTPGDDAALNEVFRSVHTLKGSVGLFDYPAFTKLVHAGE 67

Query: 67  DLMDAVRRRQVAYSEVLADRLLDAMDFVAMLCDGLEMEAEQADPHAQEAVQIASSLRQLI 126
           D++ AVR  QVA +  L D LLD +D V    D +E      D     ++ + +SLR  +
Sbjct: 68  DVLSAVRAGQVALTSELVDLLLDTLDQVGAWVDAIERSGLLPDGAEGLSLALTTSLRATL 127

Query: 127 GEHAGVESAVGDLARIGDAQDRGAAIVAAPAAGQALPLRAIPEPLRRQAFAQAQAGGELH 186
               G E                     AP +   L L  +PE  R  AF  A  G  L 
Sbjct: 128 PREHGAEPT------------SAPEPTEAPVSIDHLAL--LPEADRLAAFRAALCGAPLL 173

Query: 187 WIAYRPSRECFFQGDDPFHRAREVPGFIWGRIEAPAAWPPLAELNAYDCVLHFQIVAAAS 246
            + Y P+ +CFF G+DP +  R++P      IE    W  +  ++ Y C+L  + +   +
Sbjct: 174 SLDYAPAEDCFFSGEDPVNLFRQIPDLFSLVIEPRTPWQSVETVDPYCCLLRLRALCGGN 233

Query: 247 QAELMEYFRYVPDQV------------------------ELTQLAAQWLAPAPESAERAS 282
           +  + + FRYV +QV                        +  + A+  LA A   A R +
Sbjct: 234 KTAIEQLFRYVIEQVTVHTVPAHLLVIPQGERNDGPVYGDFVEEASTHLAKADWPALRRA 293

Query: 283 AGAHAE---------------------PAQDP--IDAVMAEIFAIQRQILQSEANMGWQD 319
            GA  +                     P  DP  ++A++A + A    ++   A  G   
Sbjct: 294 VGALLDLTARPLFVASALRWLDAVLSVPTPDPGWVEALIAAV-AHGNAVVLPPAGTGAAS 352

Query: 320 GRTQAVAS----TLMNCCRSIGNLE----LIGEL-EIARQQSLQLRSCDPLLA-WLNANP 369
            R+ A  S    ++++  R I  +     L G L  +AR     LR+     A W  A  
Sbjct: 353 ARSSAALSATILSILDGQRVILEMPRDEGLPGRLASVARTVDNVLRAAGHDTAPWTGATA 412

Query: 370 LPLQRGPVASV-ASVASAEAGAEAAEAVAVEVRQESLPQPEALSRQEPPQVQPPAPPLRE 428
              Q G  A + A +A+    +E     A E   E++  P                    
Sbjct: 413 AAGQSGSAAPMLAFLAALFETSETTNETASETASETVGAP-------------------- 452

Query: 429 SLPEESGRA-GRRAEESLSGNKSVKVEQVKIDRLMNLIGEMVVSKNALPYLAQRAEDQFG 487
             P E G A G    +    N+ +KV+Q KID LM LIGE+VVSKN+LP+LA+RAE+  G
Sbjct: 453 --PPEGGEALGPVLADQRPANRVLKVDQAKIDTLMALIGELVVSKNSLPFLARRAEEVHG 510

Query: 488 VRELAREIKAQYAVINRIAEEMQDAIMQVRMMPVSVVFQRFPRLVRDISRKLGKEVQLVL 547
            RE+ REIK  +AV++R+A+EMQ AIM VRM+PVS VF+RFPRLVRDI+RKLGK + LV+
Sbjct: 511 SREMGREIKDTFAVVDRLAQEMQAAIMAVRMLPVSEVFERFPRLVRDIARKLGKHIDLVI 570

Query: 548 VGEETEADKNIIEALADPLIHIVRNSLDHGLEGPEQRRASGKPALGSLTISAAHEGDQVV 607
            GE+T ADK I+E L DPL+HI+RNSLDHG+E PE+R A+GKP    + + A H+ DQVV
Sbjct: 571 EGEDTAADKTIVEMLGDPLLHIIRNSLDHGIESPEEREAAGKPPTARVLVKAFHDSDQVV 630

Query: 608 IVIEDDGKGIDPALIKRKAYEKGLIDEAQLERISDQDAVNLVFSSGFSTAEVVSDLSGRG 667
           I + DDG+GIDP  I+  A  KG+I+  +  R+SDQ+AVNLVF  GFSTA  VSDLSGRG
Sbjct: 631 IEVSDDGRGIDPVKIRAAAVAKGVIEAERAARLSDQEAVNLVFLPGFSTAGQVSDLSGRG 690

Query: 668 VGMDVVRNAVEKVNGSLALHSVSGKGTRLQISLPLSMAVTKVMIIES-DGQLFGVPMEHV 726
           VGMDVV + ++K NG ++L S  G GT +++SLPLSMAVT+VM++E+  G LFG+PM+H+
Sbjct: 691 VGMDVVVSTMDKANGVVSLSSTPGLGTTVRLSLPLSMAVTRVMMVEAGGGMLFGIPMDHI 750

Query: 727 METVRVPRSSLHFANSSAKMVLRGHILGLKGINQILGIAAEQKTNADG-EVAVLVVRVGG 785
            +TVR+PR ++     S   VLR  I+ L  ++ +LG+A       +  E AVLVVRVG 
Sbjct: 751 AQTVRIPRKAVRRIKQSEAFVLRDAIVPLVRLDTLLGLAPPVWFGDESQEDAVLVVRVGN 810

Query: 786 QSVGLVIDDFRETVDVIQKPLLGILGGLSLYSGSALMGDGSVLMVLNTREMF 837
              GLV+D FRE +D+I KP  GIL GL  YSG+AL+GDG VL+VLN +E+F
Sbjct: 811 ALTGLVVDHFREGMDIILKPFDGILAGLPGYSGTALLGDGRVLLVLNLKELF 862