Pairwise Alignments

Query, 837 a.a., chemotaxis protein CheA from Herbaspirillum seropedicae SmR1

Subject, 693 a.a., CheA Signal Transduction Histidine Kinases (STHK) (NCBI) from Rhodospirillum rubrum S1H

 Score =  269 bits (688), Expect = 4e-76
 Identities = 145/386 (37%), Positives = 235/386 (60%), Gaps = 14/386 (3%)

Query: 447 GNKSVKVEQVKIDRLMNLIGEMVVSKNALPYLAQRAEDQFGVRELAREIKAQYAVINRIA 506
           G  S++V   ++D LM+ +GE+V++++ L  +A    D         ++KA    I R+A
Sbjct: 303 GADSIRVPAERLDELMDRVGELVIAQSRLTQVAASINDM--------QVKAIAEEIERLA 354

Query: 507 EEMQDAIMQVRMMPVSVVFQRFPRLVRDISRKLGKEVQLVLVGEETEADKNIIEALADPL 566
            E++D  M VRM+P+S +F RF RLV D++  LGK+++L   GEETE DK +IE L DPL
Sbjct: 355 HELRDTTMGVRMVPISSLFGRFRRLVHDLAHDLGKQIELTTFGEETELDKTVIERLNDPL 414

Query: 567 IHIVRNSLDHGLEGPEQRRASGKPALGSLTISAAHEGDQVVIVIEDDGKGIDPALIKRKA 626
           IH++RNS+DHGLE PE R+ +GKP  G +T+SA H G +V++ I DDG+G+D A I+ +A
Sbjct: 415 IHLIRNSIDHGLETPEGRKEAGKPPAGRITLSARHSGAEVLVSIIDDGRGLDRARIQARA 474

Query: 627 YEKGLIDEAQLERISDQDAVNLVFSSGFSTAEVVSDLSGRGVGMDVVRNAVEKVNGSLAL 686
            E+GL+  A   ++SD D   ++F +GFSTA+VV+ LSGRGVGMDVV+  +E + G + +
Sbjct: 475 EEQGLL--APGVKLSDNDLFQVIFQAGFSTAKVVTSLSGRGVGMDVVKRTIEGLRGKIDI 532

Query: 687 HSVSGKGTRLQISLPLSMAVTKVMIIESDGQLFGVPMEHVMETVRVPRSSLHFANSSAKM 746
            S  GKGT L + LPL++A+   +++      + +P+  V E V +       +   + +
Sbjct: 533 ASTPGKGTELTLRLPLTLAIIDGLLVRVGKARYVLPLSAVEECVELSAEEDGRSRGRSFL 592

Query: 747 VLRGHILGLKGINQILGIAAEQKTNADGEVAVLVVRVGGQSVGLVIDDFRETVDVIQKPL 806
            +RG ++    + ++  ++A     AD    V++V  G   VGLV+D        + K L
Sbjct: 593 NIRGDLVPFLRLRELFQVSAP----ADPYQKVVIVSSGEFRVGLVVDQVIGNHQTVIKSL 648

Query: 807 LGILGGLSLYSGSALMGDGSVLMVLN 832
             +   +  +SG+ ++GDG+V ++L+
Sbjct: 649 SKLHADVETFSGATILGDGAVALILD 674



 Score = 67.0 bits (162), Expect = 4e-15
 Identities = 69/265 (26%), Positives = 111/265 (41%), Gaps = 48/265 (18%)

Query: 6   DQFILETRDLLQGISEKLMQLEDAPEHVELLESLFRMVHTLKGNSGLFDVPEMTRVLHAC 65
           + F  E ++LL+ + + L+ LE AP+  +L++S FR +HT+KG+  +F    +    H  
Sbjct: 8   ETFRQEAQELLEQLEQALLDLEHAPDDGDLIDSAFRALHTIKGSGSMFGFDAVAAFTHHV 67

Query: 66  EDLMDAVRRRQVAYSEVLADRLLDAMDFVAMLCDGLEMEAEQADPHAQEAVQIASSLRQL 125
           E   D VR+ +V  S  L    L A D + +L +          P   E+ +  + LR  
Sbjct: 68  ETAFDLVRKGKVTPSRELIAVALAAKDRMRLLIE---------QPETPESAEGDAILR-- 116

Query: 126 IGEHAGVESAVGDLARIGDAQDRGAAIVAAPAAGQA--LPLRAIPEPLRRQAFAQAQAGG 183
                       DL  I DA D        P+AG+    P+ A  +P             
Sbjct: 117 ------------DLKAIVDASD-------LPSAGEGGDAPVAAREQP------------A 145

Query: 184 ELHW-IAYRPSRECFFQGDDPFHRAREVPGFIWGRIEA-PAAWPPLAELNAYDCVLHFQI 241
           E+ W I +R +R+    G +P     E+       I A     P L  L   DC L + +
Sbjct: 146 EITWRIRFRLARDAMAMGTNPLLLLDELRTLGSATIVALTGEVPSLEVLVPSDCHLAWDV 205

Query: 242 VAAASQ--AELMEYFRYVPDQVELT 264
           +   SQ    + + F +V D +EL+
Sbjct: 206 MLTTSQPRTAIEDVFMFVIDDMELS 230