Pairwise Alignments

Query, 837 a.a., chemotaxis protein CheA from Herbaspirillum seropedicae SmR1

Subject, 942 a.a., CheA Signal Transduction Histidine Kinases (STHK) (NCBI) from Rhodospirillum rubrum S1H

 Score =  296 bits (759), Expect = 3e-84
 Identities = 164/477 (34%), Positives = 280/477 (58%), Gaps = 27/477 (5%)

Query: 374 RGPVASVASVASAEAGAEAAEAVAVEVRQESLPQPEALS--RQEPPQVQPPAPPLRESLP 431
           +G  A+  +  +AE  AE A A   E +  + P PE +   +   P VQP  PP   +  
Sbjct: 168 KGKRAATEAELAAELAAELAAAEKAE-QAVAAPVPEVIPEVKAATPVVQPAKPPAVTAAH 226

Query: 432 EESGRAGRRAEESLSGN---KSVKVEQVKIDRLMNLIGEMVVSKNALPYLAQRAEDQFGV 488
           + +G  G    E   G+   +S++V    ++ LM L+ E+V+++N L  + + ++D   V
Sbjct: 227 DTNGPNGGGGGEQKEGSVASQSIRVNVELLENLMTLVSELVLTRNQLLQMVRGSDDSEFV 286

Query: 489 RELAREIKAQYAVINRIAEEMQDAIMQVRMMPVSVVFQRFPRLVRDISRKLGKEVQLVLV 548
             L R        ++ I  ++Q+ +M+ RM P+   + + PR+VRD+S ++ K++ L + 
Sbjct: 287 APLQR--------LSHITTDLQEGVMKTRMQPIGNAWAKLPRIVRDLSIEMHKKIDLQMY 338

Query: 549 GEETEADKNIIEALADPLIHIVRNSLDHGLEGPEQRRASGKPALGSLTISAAHEGDQVVI 608
           G +TE D+ ++E + DPL H+VRNS DHGLE P++R A+GKP  G + ++A HEG  ++I
Sbjct: 339 GADTELDRQVLEMIKDPLTHMVRNSGDHGLEFPDERAAAGKPETGVIKLNAYHEGGHIII 398

Query: 609 VIEDDGKGIDPALIKRKAYEKGLIDEAQLERISDQDAVNLVFSSGFSTAEVVSDLSGRGV 668
            I DDG+G++   I+ KA   GL  EA+LE ++DQ     +F +G STAE V+ +SGRGV
Sbjct: 399 EISDDGRGLNLERIRAKALSNGLATEAELENMTDQQIAQYIFRAGLSTAEKVTAVSGRGV 458

Query: 669 GMDVVRNAVEKVNGSLALHSVSGKGTRLQISLPLSMAVTKVMIIESDGQLFGVPMEHVME 728
           GMDVV+  +EK+ G++ L +  GKG+R  I +PL++A+   +I+E+ G+ F +P   V+E
Sbjct: 459 GMDVVKTNIEKIGGTVELKTWPGKGSRFVIKIPLTLAIVSALIVEASGERFAIPQISVLE 518

Query: 729 TVRVPRSS---LHFANSSAKMVLRGHILGL----------KGINQILGIAAEQKTNADGE 775
            VRV  +S   +   N++  + LR  ++ L           G ++ LG  A+       E
Sbjct: 519 LVRVTANSETTIEQINTAPVLRLRDRLMPLVSLSALLRLDDGDDEELGKTADATAGRRDE 578

Query: 776 VAVLVVRVGGQSVGLVIDDFRETVDVIQKPLLGILGGLSLYSGSALMGDGSVLMVLN 832
             ++V +VG  + G+++D   +T +++ KP+  IL  +S++SG+ ++GDGSV+M+L+
Sbjct: 579 TFIVVSQVGTYTFGIIVDRVFDTEEIVVKPVAPILRHVSMFSGNTILGDGSVIMILD 635



 Score = 53.1 bits (126), Expect = 7e-11
 Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 2/111 (1%)

Query: 4   LRDQFILETRDLLQGISEKLMQLEDAPEHVELLESLFRMVHTLKGNSGLFDVPEMTRVLH 63
           L  +F+ ET + +  +  +L+ LE  P    +L ++FR+VHT+KG  G   +P +  + H
Sbjct: 4   LLSEFLTETSESIATLDVELVNLERNPNDKGILSNIFRLVHTIKGTCGFLGLPRLESLAH 63

Query: 64  ACEDLMDAVRRRQVAYSEVLADRLLDAMDFVAMLCDGLEMEAEQADPHAQE 114
           A E+++   R   +  +      +L  +D +  +     +EA + +P   +
Sbjct: 64  AGENVLGKFRDGDLEVTPAAVTVILHTIDRIKEILG--HLEANEVEPEGDD 112



 Score = 35.8 bits (81), Expect = 1e-05
 Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 35/223 (15%)

Query: 592 LGSLTISAAHEGDQVVIVIEDDGKGIDPALIKRKAYEKGLIDEAQLERISDQDAVN---- 647
           LG    + A   D+  IV+   G            Y  G+I    ++R+ D + +     
Sbjct: 565 LGKTADATAGRRDETFIVVSQVG-----------TYTFGII----VDRVFDTEEIVVKPV 609

Query: 648 ---LVFSSGFSTAEVVSDLSGRGVGMDVVRNAVEKVNGSLALHSVSGKGTRLQISLPLSM 704
              L   S FS   ++ D S   V M +  N +    G + + S SG     Q    +  
Sbjct: 610 APILRHVSMFSGNTILGDGS---VIMILDPNGIASATGEVTMGSASGTTEAAQSHEFVGE 666

Query: 705 AVTKVMIIESDGQ-LFGVPMEHVMETVRVPRSSLHFANSSAKMVLRGHILGLKGINQILG 763
             T +++  + G+ L  VP+  V     +    +  +     +  RG ++ L GI+    
Sbjct: 667 DRTSLLVFRAGGKDLKAVPLALVARLEEIETDKIEHSFGKPVVQYRGQLMPLVGIHDEFT 726

Query: 764 IAAEQKTNADGEVAVLVVRVGGQSVGLVIDDFRETVDVIQKPL 806
           +A E      G   VLV     +++GLV+D   E VD+++  L
Sbjct: 727 LAGE------GRQPVLVFSDRDRTMGLVVD---EIVDIVEDHL 760