Pairwise Alignments

Query, 837 a.a., chemotaxis protein CheA from Herbaspirillum seropedicae SmR1

Subject, 1030 a.a., CheA signal transduction histidine kinase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  357 bits (917), Expect = e-102
 Identities = 184/464 (39%), Positives = 295/464 (63%), Gaps = 11/464 (2%)

Query: 376  PVASVASVASAEAGAEAAEAVAVEVRQESLPQPEALSRQEPPQVQPPAPPLRESLPEESG 435
            P A+V   A A A A AA A + +        P A +R   P   P AP         + 
Sbjct: 568  PAAAVKPAAPAPASAVAAPAASAKPAA-----PVAPARPAAPTA-PSAPAAPAGGQGAAA 621

Query: 436  RAGRRAEESLSGNKSVKVEQVKIDRLMNLIGEMVVSKNALPYLAQRAEDQFGV--RELAR 493
             A  +   +   + +++V+  K+D LMNLIGE+++++N    LA+R ED   V   E+A+
Sbjct: 622  AAQAQQAGAAKASSTIRVDHEKLDHLMNLIGELIINRNRYTMLARRLEDDTNVVIAEVAQ 681

Query: 494  EIKAQYAVINRIAEEMQDAIMQVRMMPVSVVFQRFPRLVRDISRKLGKEVQLVLVGEETE 553
            ++      + RI++++QD IM+VRM+PVS VF RFPRLVRD+SRK GKEV L+L GEETE
Sbjct: 682  DLSETTYAMARISDDLQDTIMKVRMVPVSSVFSRFPRLVRDLSRKSGKEVDLILEGEETE 741

Query: 554  ADKNIIEALADPLIHIVRNSLDHGLEGPEQRRASGKPALGSLTISAAHEGDQVVIVIEDD 613
             DK+++E + DPL+H++RN++DHG+E  ++R A GK A G +T+ A H+G+ V I IEDD
Sbjct: 742  LDKSVVEVIGDPLVHLIRNAVDHGVESEDERVAKGKKAKGKVTLRAYHKGNSVAIEIEDD 801

Query: 614  GKGIDPALIKRKAYEKGLIDEAQLERISDQDAVNLVFSSGFSTAEVVSDLSGRGVGMDVV 673
            GKGIDP  ++  A  KG+I   + + + D++A+ L+F+ GFS+AE ++D+SGRGVGMDVV
Sbjct: 802  GKGIDPEKMREVAVRKGIITPDEAKAMDDREAMELIFAPGFSSAEKITDISGRGVGMDVV 861

Query: 674  RNAVEKVNGSLALHSVSGKGTRLQISLPLSMAVTKVMIIESDGQLFGVPMEHVMETVRVP 733
            R  ++ + GS+++HS  GKGTR  +SLPL++A+   +++   G+++ +P++ V ET ++ 
Sbjct: 862  RTNIKNLKGSVSIHSEIGKGTRFTLSLPLTLAIIDALMVNVAGEMYAIPLDAVSETTKIE 921

Query: 734  RSSLHFANSSAKMVLRGHILGLKGINQILGIAAEQKTNADGEVAVLVVRVGGQSVGLVID 793
               L        + LRG +LG+  ++++LG+    K +    ++V+V+    + +GLV+D
Sbjct: 922  ARRLTDVKGRKAVTLRGEVLGIASLSELLGLPKGDKQDV---LSVVVIHDNDRRLGLVVD 978

Query: 794  DFRETVDVIQKPLLGILGGLSLYSGSALMGDGSVLMVLNTREMF 837
               E  +++ KPL   LG L   SG+ +MGDGSV+++L+  E++
Sbjct: 979  RLLERQEIVIKPLGAYLGDLKGISGATIMGDGSVILILDPHEVY 1022



 Score = 75.9 bits (185), Expect = 1e-17
 Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 6/188 (3%)

Query: 8   FILETRDLLQGISEKLMQLEDAPEHVELLESLFRMVHTLKGNSGLFDVPEMTRVLHACED 67
           FI+E ++ L+ I   L++LE AP+++ LL  +FR +H+LKG SG   +  +  + H  E+
Sbjct: 14  FIVEAKEHLETIEPNLLELEKAPDNLALLNEIFRPMHSLKGASGFLGLNRINGLAHRAEN 73

Query: 68  LMDAVRRRQVAYSEVLADRLLDAMDFVAMLCDGLEMEAEQADPHAQEAVQIASSLRQLIG 127
           +MD +R+  +  +  + D +L A D +  + D L+    + D   +  +    ++     
Sbjct: 74  IMDELRKGDMTVTSEIMDVILSATDALRQMVDNLDTTGGEGDVETESIIATIDAIMAGGA 133

Query: 128 EHAGVESAVGDLARIGDAQDRGAA-IVAAPAAGQALPLRAIPEPLRRQAFAQAQA----- 181
             A    A    A     +   AA  V APA   A    A PEP+      QA+      
Sbjct: 134 PPAAPRPAPAAPAPAPAPEPAPAAEPVVAPAPAPAPAPAAEPEPVAAAPRPQAEREVPAD 193

Query: 182 GGELHWIA 189
            G   WIA
Sbjct: 194 AGSAEWIA 201



 Score = 64.7 bits (156), Expect = 3e-14
 Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 8   FILETRDLLQGISEKLMQLEDAP-EHVELLESLFRMVHTLKGNSGLFDVPEMTRVLHACE 66
           FI E R++ + +S  L++LE  P E  EL+  LFR  H LKGNSG+    E+  + H  E
Sbjct: 222 FIDEAREMAENLSSGLLELERNPTEQGELVNDLFRFFHNLKGNSGIIGFAELNSLTHEAE 281

Query: 67  DLMDAVRRRQVAYSEVLADRLLDAMDFVAMLCDGLEMEAEQADP 110
            L++ VRR ++  S  L D LL  +D +  L   ++  +    P
Sbjct: 282 TLLNNVRRGEMTGSHELVDLLLLVVDLLEALVTRIDPVSGNVTP 325



 Score = 31.6 bits (70), Expect = 2e-04
 Identities = 42/196 (21%), Positives = 71/196 (36%), Gaps = 22/196 (11%)

Query: 8   FILETRDLLQGISEKLMQLEDAPEHVELLESLFRMVHTLKGNSGLFDVPEMTRVLHACED 67
           FI   R  +  +   L  L       E +++L+R + T++ +SG   + ++         
Sbjct: 395 FINTVRQQMDNVGVALKTLAVDGTQREYVDALYRCLVTIQNSSGYMGLDDIRVYAERTAG 454

Query: 68  LMDAVRRRQVAYS----------EVLADRLLDAMDFVAMLCDGLEMEAEQADPHAQEAVQ 117
           L+D  R   + +S           ++ D L   +  ++M       EA  A P A+ A  
Sbjct: 455 LVDQARFSGMDFSLMVDLMEQETSIIGDMLEKQIARISMPAPAQAPEAAPAAPEAKAAPA 514

Query: 118 IASSLRQLIGEHAGVESAVGDL-------ARIGDAQDRGAAIVA-APAAGQALPLRAI-- 167
            A+  + +    A       D        A   DA+D  AA+V  +   G   P  A+  
Sbjct: 515 PAAEAKAVAAPPAAKTDVTTDARAAASVDAEDEDAEDDDAAVVTISSVTGTPAPAAAVKP 574

Query: 168 --PEPLRRQAFAQAQA 181
             P P    A   A A
Sbjct: 575 AAPAPASAVAAPAASA 590