Pairwise Alignments

Query, 837 a.a., chemotaxis protein CheA from Herbaspirillum seropedicae SmR1

Subject, 762 a.a., CheA signal transduction histidine kinases (RefSeq) from Shewanella sp. ANA-3

 Score =  305 bits (781), Expect = 6e-87
 Identities = 164/461 (35%), Positives = 275/461 (59%), Gaps = 14/461 (3%)

Query: 376 PVASVASVASAEAGAEAAEAV--AVEVRQESLPQPEALSRQEPPQVQPPAP-PLRESLPE 432
           P    A   SA A  E A+A   A      + P+    +   PP V+      + E  P 
Sbjct: 299 PAKVTAKAESAPAKTEPAKAPPSAAAPSTPAAPKASVATPATPPAVKAKTDVAVAEKAPA 358

Query: 433 ESGRAGRRAEESLSGNKSVKVEQVKIDRLMNLIGEMVVSKNALPYLAQRAEDQFGVRELA 492
           ++  A   +     G  +V+V+  ++D++MN++GE+V+ +N L  L    +D+       
Sbjct: 359 KAAAAA--SANVPQGETTVRVDTARLDQIMNMVGELVLVRNRLLSLGISRDDE------- 409

Query: 493 REIKAQYAVINRIAEEMQDAIMQVRMMPVSVVFQRFPRLVRDISRKLGKEVQLVLVGEET 552
            E+    A ++ +  ++Q A+M+ RM P+  VF RFPR+VRD++R L KE+ LVLVGEET
Sbjct: 410 -EMSKALANLDLVTADLQGAVMKTRMQPIKKVFGRFPRVVRDLARTLNKEIDLVLVGEET 468

Query: 553 EADKNIIEALADPLIHIVRNSLDHGLEGPEQRRASGKPALGSLTISAAHEGDQVVIVIED 612
           + DKN++EALADPL+H+VRNS+DHG+E P  R ASGKP  G++T+SA+ EGD +++ IED
Sbjct: 469 DLDKNLVEALADPLVHLVRNSVDHGIEMPNDREASGKPRTGTITLSASQEGDHILLKIED 528

Query: 613 DGKGIDPALIKRKAYEKGLIDEAQLERISDQDAVNLVFSSGFSTAEVVSDLSGRGVGMDV 672
           DG G+DP  +K+ A ++G++DE    R++D +A NL+F+ GFST   +SD+SGRGVGMDV
Sbjct: 529 DGAGMDPEKLKQIAIKRGVLDEDTAARMTDSEAYNLIFAPGFSTKVEISDISGRGVGMDV 588

Query: 673 VRNAVEKVNGSLALHSVSGKGTRLQISLPLSMAVTKVMIIESDGQLFGVPMEHVMETVRV 732
           V+  + ++NG++ + S+ GKGT L+I +PL++A+   ++++   Q+F +P+  V E   +
Sbjct: 589 VKTRITQLNGTVHIDSMKGKGTVLEIKVPLTLAIMPTLMVDVAKQVFALPLSSVNEIFHL 648

Query: 733 PRSSLHFANSSAKMVLRGHILGLKGINQILGIAAEQKTNADGEVA-VLVVRVGGQSVGLV 791
             +  +  +    +++R   + L  + Q L        + D +   V++V++G   +G V
Sbjct: 649 DLTKTNIVDGQLTVIVRNKAVPLFYLEQWLHRNRTNFKHGDKKHGHVVIVQLGMMQIGFV 708

Query: 792 IDDFRETVDVIQKPLLGILGGLSLYSGSALMGDGSVLMVLN 832
           +D      +V+ KPL  +L G    +G+ +  DG + ++L+
Sbjct: 709 VDALIGQEEVVIKPLGALLHGTPGMAGATITSDGGIALILD 749



 Score = 63.5 bits (153), Expect = 4e-14
 Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 4/135 (2%)

Query: 3   LLRDQFILETRDLLQGISEKLMQLEDAPEHVELLESLFRMVHTLKGNSGLFDVPEMTRVL 62
           +L+D F++E  ++L+ + E+L+ LE+ P+   LL ++FR  HT+KG +G   +  M  V 
Sbjct: 9   ILQD-FLIEAGEILELLQEQLVALENNPDDTNLLNAIFRGFHTVKGGAGFLSLTPMVDVC 67

Query: 63  HACEDLMDAVRRRQVAYSEVLADRLLDAMDFVAMLCDGLEMEAEQ--ADPHAQEAVQIAS 120
           H  E+  D +R  + + S  L D +L A+D +  +    +   +Q  ADP     +++ S
Sbjct: 68  HEAENTFDLLRTGKRSVSAELMDIILQAVDAINTMFAQTQQGEQQDPADPALLAKLKMLS 127

Query: 121 SLRQLIGEHAGVESA 135
           S   L  E +G  SA
Sbjct: 128 SGEPLPSE-SGQSSA 141