Pairwise Alignments

Query, 396 a.a., ABC transporter substrate-binding protein from Herbaspirillum seropedicae SmR1

Subject, 384 a.a., Extracellular ligand-binding receptor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  117 bits (294), Expect = 4e-31
 Identities = 95/350 (27%), Positives = 167/350 (47%), Gaps = 7/350 (2%)

Query: 5   AAALALPWGPSHAAEA-IRIGEINS-RHRLSTAGQAYRNGLALALEQINAAGGVGGRPLQ 62
           AA  AL  G + A +  IR+G +       +  GQ    GL LA E+INA+GG+ GR ++
Sbjct: 4   AAVAALVAGSATAQDGPIRVGVVTPISGTYAGIGQQVSWGLDLAAEEINASGGIMGRQIE 63

Query: 63  LVVREDDGDADQAARNARALISQDHVEVLTGSMLSDVALAVSREAARGRTVLVVGDALSD 122
           L+  + + +   A + A  L++ + V+ LTG++ S   LAV + A R   +L    + SD
Sbjct: 64  LIYEDSEANPAVAVQKAEKLMTAEDVDFLTGTVNSGATLAVGQVAERAGKLLATTVSFSD 123

Query: 123 AITLDKGNRYTFRVRPSTYMQAAMLAEQA-ARLPGRRWAVVAPNYEYGQSAVASFKLLLK 181
           AIT +K +   FRV      Q+A LA    +  PG +   + P+YE G+S VA+FK   +
Sbjct: 124 AITGEKCSPNVFRVNARAGQQSAALAAWVESEKPGAKVFYLGPDYEMGRSTVAAFKSNAE 183

Query: 182 QARPDVEFVSDQWPALGKIKADDVARAIRQSRPDGIFNATFGEDLQKFVQAGNRQQLFEG 241
           Q     +   + +  L           IR ++P+ ++ +  G D  +         + +G
Sbjct: 184 QV--GAKSTGEVFAPLDSKDYSQYFGRIRAAQPEVLYTSVAGNDTVRLFTQMQDFGVRDG 241

Query: 242 VRVV-SMASAGAPSLDPSQSEAIRDWLAIGYPWDQVSLPEHQRFLEAYLKRFSERPQLSA 300
           + ++ +  +  + ++D   + A      +GY    +  PE++ F+EA+  R    P L  
Sbjct: 242 LTILGASGTVTSQNIDAIGAAAEGFITGVGYS-TLIDSPENKAFVEAFNARNGADPDLYG 300

Query: 301 VFGYTTMMAIAAGLKKSEGGDGEVLVEAMRGLQFGSPLGPVSFRALDQQA 350
              Y  + A    ++ + G   + +  A+ GL++ +P G  + RA D QA
Sbjct: 301 ADSYGLLFAYKKAVEAAGGTGTDEVRAALEGLEWDTPQGVKTIRAGDHQA 350