Pairwise Alignments

Query, 300 a.a., LysR family transcriptional regulator from Herbaspirillum seropedicae SmR1

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella amazonensis SB2B

 Score =  181 bits (459), Expect = 2e-50
 Identities = 103/265 (38%), Positives = 152/265 (57%), Gaps = 3/265 (1%)

Query: 7   PLNAIRAFLAAARHQSFTLAAHELNVTHGAISRQIKNLEGYLGMPLFERRTRQVLLTERG 66
           PLNA++AF AAARH SFT AA EL VT  A+S QIK LE +LG+ LF R+ R +LLTE G
Sbjct: 7   PLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLLTEEG 66

Query: 67  RQFFEEASPALEILANAARRVMRDAPTRTVVINVRPSFAVRWLIPHLSDFVERYPGIAPQ 126
           + +F +       L++A  R++  +   ++ +++ PSFA++WL+P L+ F E+ P I  +
Sbjct: 67  QSYFLDIKDIFTQLSDATDRLLARSAIGSLTVSMSPSFAIQWLVPRLAKFSEKNPDIDVR 126

Query: 127 VVTSTATVGKAGSSFDIAVRRGETNWPETLKVQRFMEDELVLVASPALLQA-MPLEDVSG 185
           +    +  G      D+A+  G+ +WP  L+  +   + L+ V SP LL    PLE  + 
Sbjct: 127 IKAVDSEEGSLTDDVDVAIYYGQGSWP-GLRADKLRNEVLIPVCSPMLLNGHKPLETPAD 185

Query: 186 LARHTVLLSRSRRNDWEDWRKLAGLKRSRSQAMLHFDHVHFVLQAVVDGLGVALSPVSLA 245
           L  HT+L   S R+DW+ W +  G+          F H   VLQA   G GVAL    LA
Sbjct: 186 LKHHTLLHDMS-RHDWQAWFRQCGVTDVNVNQGPIFSHSSLVLQAAAHGQGVALGYSVLA 244

Query: 246 DNDLRSGRLVCPFPDLRLTLAPYYL 270
             D+++GRLV PF ++ ++   YYL
Sbjct: 245 RPDIKAGRLVVPFQEVLVSKDAYYL 269