Pairwise Alignments

Query, 306 a.a., ABC transporter permease from Herbaspirillum seropedicae SmR1

Subject, 308 a.a., inner-membrane translocator (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  196 bits (497), Expect = 8e-55
 Identities = 108/292 (36%), Positives = 167/292 (57%), Gaps = 2/292 (0%)

Query: 13  LFAGAIRVGTPFLFVSLGECLTEKGGRVNLGLEGILVCGAMTGYAASFYSGSAWLGVLAA 72
           L A  I   TP L  +LGE + EK G +NLG+EG+++ GA+ G+A +  + S  LG L A
Sbjct: 9   LIASLIVASTPILLAALGELVCEKAGVLNLGVEGMMIFGAICGFAIAVETESPLLGFLCA 68

Query: 73  GCTGLLLGVLHGVVCSLPRVNDIAFGIALMLLGTGLAFFLGKPFIQPQAPMLPSIDLGAW 132
              G  L ++ GV+      N +A G+AL L G G +  +G+ ++  +AP  P++  G  
Sbjct: 69  ALAGAALSMIFGVLTQFLLSNQVATGLALTLFGLGFSALVGQGYVGLKAPATPAVPFGPL 128

Query: 133 SSNDRLHHAL-QINALFFIGVVLALVLQWGLSATRWGLALRLVGDHAETARALGYRLTGT 191
           +    +   L   +A+ +  + L   + + L+ TR GL LR VG+  + A ALGY++   
Sbjct: 129 ADLPVVGPILFSHDAMVYASIALVAAVWYVLAHTRAGLILRAVGESHDAAHALGYKVVRI 188

Query: 192 RIAATAAGGFLAAVGGAYLSLYYPGSWNEGLSSGQGLMAVALVIFARWQPWRCLLAALLF 251
           R+ A A GG LA +GGAYLSL     W EG+++G G +A+A+V+FA W+PWR +L A LF
Sbjct: 189 RLLAIAFGGALAGLGGAYLSLVRVPQWTEGMTAGAGWIALAIVVFASWRPWRIVLGAYLF 248

Query: 252 GAAGALGPALQAVGVTSGYYLFNAAPYALTLLIMIMTCRP-DRTLSSAPGEL 302
           G    L   LQA G+     L + +PY +T++++++  R   RT  +AP  L
Sbjct: 249 GGISVLQLNLQAAGIKIPVELLSMSPYVITIVVLVLMSRDRTRTALNAPAAL 300