Pairwise Alignments

Query, 306 a.a., ABC transporter permease from Herbaspirillum seropedicae SmR1

Subject, 314 a.a., inner-membrane translocator (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  148 bits (374), Expect = 1e-40
 Identities = 95/290 (32%), Positives = 149/290 (51%), Gaps = 8/290 (2%)

Query: 9   LLLALFAGAIRVGTPFLFVSLGECLTEKGGRVNLGLEGILVCGAMTGYAASFYSGSAWLG 68
           L  + +A AIR+ +P +F ++GE + E+ G +NLG+EGI+V GA  G+ A +     W G
Sbjct: 8   LSASFWAAAIRIASPLIFATMGELICERAGVLNLGIEGIMVAGAFAGWMAVYTGTDLWTG 67

Query: 69  VLAAGCTGLLLGVLHGVVCSLPRVNDIAFGIALMLLGTGLAFF-----LGKPFIQPQAPM 123
           V  A   G+L G+LH  +     ++    G+ + LL T   +F     L +    P+   
Sbjct: 68  VAVAFGAGMLFGLLHATLTVPFGLSQHVVGLGITLLATSATYFAYRVALPEVSSPPRIEA 127

Query: 124 LPSIDLGAWSSNDRLHHAL-QINALFFIGVVLALVLQWGLSATRWGLALRLVGDHAETAR 182
               ++   S    L  AL     L ++   +A +  + L  T  GLALR  G++     
Sbjct: 128 FQPYEIPLLSDLPLLGPALFSQTPLTYLAFAVAGLTAFTLYRTPLGLALRAAGENPSAVE 187

Query: 183 ALGYRLTGTRIAATAAGGFLAAVGGAYLSLYYPGSWNEGLSSGQGLMAVALVIFARWQPW 242
           A G  +TG R+ A   G  L AVGGA+L++    S+   + +G+G + +ALV+F  W+P 
Sbjct: 188 AQGLSVTGLRMGAVIVGSGLMAVGGAFLTMSAFNSFFFEMVNGRGWICIALVVFGAWRPG 247

Query: 243 RCLLAALLFGAAGALGPALQAVGVTSG--YYLFNAAPYALTLLIMIMTCR 290
           + LL ALLF A  AL   LQ  G+ +   Y +F   PY L++L +I+  R
Sbjct: 248 KALLGALLFAAFDALQVRLQQTGLGADIPYQVFLMLPYILSILALIVMSR 297