Pairwise Alignments

Query, 306 a.a., L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) (from data) from Herbaspirillum seropedicae SmR1

Subject, 304 a.a., dihydrodipicolinate synthetase family protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 83.2 bits (204), Expect = 7e-21
 Identities = 72/250 (28%), Positives = 125/250 (50%), Gaps = 12/250 (4%)

Query: 6   YRGVFPVAPTIFDANGKLDLEGQKRAIDFMIDAGSNGLCILANFSEQFVLS-DEERVQVQ 64
           ++GV+P   T F+ +G ++     R ++ +I  G NG+  L    E   LS DE+R  ++
Sbjct: 5   WQGVYPAISTQFNEDGSINFASNTRMLEQLILDGINGIIALGTIGENASLSADEKRAFLK 64

Query: 65  NTVLEHVAGRVPVIVTTTHYGSQICAERSRAAQDAGAAMVMVMPPYHGATFRVPEKQIYE 124
           +TV E VAGR+PVI   T   +Q+  +  +  +  G   VM++P      +R  ++++  
Sbjct: 65  HTV-ETVAGRIPVIAGCTENTAQLAIQYVQDVEAIGVDGVMLLP---AVVYRGTDREVLT 120

Query: 125 FYKHVSDAIDIPIMIQDAPVA-GTPLSAPFLARMAKEIEQVSYFKIETAGAASKLRDLIE 183
            Y+ V+ A  +PIMI + PV+ G  ++    A +A E   V+    E+     +L +L  
Sbjct: 121 HYQMVARATRLPIMIYNNPVSYGVDINLDMTAILANEPNIVAI--KESTTDTRRLTELQS 178

Query: 184 LGGDAVVGPWDGEEAITLIPDLDAGATGAMTG--GGYPDGIRKIVDAYFAGDIEKAAELY 241
             GD     + G + I L   L  GATG ++G    +P     +     AG +E+A E+Y
Sbjct: 179 RFGDRFT-LFCGVDDIAL-ESLLLGATGWISGLTNVFPRESVTLYKLARAGRMEEAREIY 236

Query: 242 MQWLPLINYE 251
             ++PL+  +
Sbjct: 237 RWFMPLLRLD 246