Pairwise Alignments

Query, 400 a.a., hemolysin D from Herbaspirillum seropedicae SmR1

Subject, 380 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  343 bits (880), Expect = 5e-99
 Identities = 192/377 (50%), Positives = 257/377 (68%), Gaps = 16/377 (4%)

Query: 5   PIPKPVAALTALAILSVLSACGKPPGGAPPAAGTPVLGVVTVHAQPVELHTELPGRTSPY 64
           PI    AAL ++  ++V  A G     APPA   P +G+VT+ A+P  + TELPGRT  Y
Sbjct: 2   PIKSANAALMSILAMAVFLA-GCQEEAAPPAQQKPKVGIVTLQAEPFAVTTELPGRTRAY 60

Query: 65  QIADVRPQVNGIIKARSFREGSDVKAGQVLYQINPASYQAAYDSSVAALAKAEASVRTAR 124
           +IA+VRPQVNGII+ R F EGSDVKAGQ LYQI+ + Y+A        L  A+ASV +++
Sbjct: 61  RIAEVRPQVNGIIQKRLFTEGSDVKAGQQLYQIDASVYEAT-------LKSAQASVASSK 113

Query: 125 LKASRYKELVAIKAVSQQDYDDAVASLGEAEADVGSARANVQTSRINLDYARLDAPISGR 184
             A RY ELV  +AVS+Q YD+A A+  +AEA++  AR +V+       Y ++ APISGR
Sbjct: 114 SLADRYAELVKDQAVSKQAYDEARAASLQAEAELERARIDVR-------YTKVLAPISGR 166

Query: 185 IGKSSVTPGALVTANQTTALTTIQQLDPIYVDVTQSSTTWLNLKEALANGQLEKSG-NGA 243
           +G+S+VT GALV+  Q   L TIQQLDPIYVDVTQ +   L L+  LA G+L+KSG N A
Sbjct: 167 VGRSAVTEGALVSNGQAQELATIQQLDPIYVDVTQPARDLLALRRDLAEGRLQKSGDNAA 226

Query: 244 KVRLVLENGRTYAQEGTLQFSDVTVNQDTGAITLRAIFPNPKTDLLPGMYVRAVLQEGVR 303
           KV L LE+G  YA EG L+FS+VTV+  TG++TLRA+FPNP  DLLPGM+V A L  G++
Sbjct: 227 KVTLKLEDGSDYAHEGKLEFSEVTVDAGTGSVTLRAVFPNPDKDLLPGMFVHAQLVAGMK 286

Query: 304 QQGLLVPQQAVSRDGAGKPVAFVVNAQGVVEQRALVTDRAIGDQWLVSSGLKEGDQLVVD 363
            + +LVPQQ V+R+  G P A VVNA+  VE R + T+RA+G++WLV  GL+ GD+++ +
Sbjct: 287 SEAILVPQQGVTRNTKGDPTAMVVNAESKVEVRPIKTERAVGNRWLVGEGLQPGDRVITE 346

Query: 364 GQQRASAGAKVKVVPWT 380
           G Q    G +V+ VP T
Sbjct: 347 GLQFIQPGVEVEAVPAT 363