Pairwise Alignments

Query, 293 a.a., DNA-directed RNA polymerase subunit alpha from Herbaspirillum seropedicae SmR1

Subject, 287 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  304 bits (779), Expect = 1e-87
 Identities = 154/261 (59%), Positives = 194/261 (74%)

Query: 28  RHSTMAWIGMAIVGFWILMAILGPSISPYDATAIVDTDVFSGMSHKFLLGSDYLGRDMLS 87
           R + +  +G++I+  W L+AI  P I PY    IVD D F  MS  F LGSDYLGRDMLS
Sbjct: 21  RFNIVGMVGLSIILCWALVAIFAPLIIPYPVGEIVDLDYFGPMSRDFWLGSDYLGRDMLS 80

Query: 88  RILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVISRALDALISIPSKMFALM 147
           RIL G R T+G++LAA  +A  +G  + + AA +GGW D ++SR LDAL SIPSK+F L+
Sbjct: 81  RILMGARYTVGISLAAVTIACFSGVVLGMIAAVAGGWLDTLLSRLLDALNSIPSKLFGLV 140

Query: 148 MVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQAARARGEGVWYIMTVEML 207
           +VA  GSS+ +L+LT ++ Y+PGAYR AR+LAVN+ AM+++  AR RGE   Y++  E+L
Sbjct: 141 VVAAVGSSIPVLILTLSVIYIPGAYRFARALAVNINAMDFITVARIRGESTLYLIRSEIL 200

Query: 208 PNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSLVRENISGLGEGALAVIMP 267
           PN+I PVLAD G+RFV++VLLLSGLSFL LGVQPP ADWG+LVRENI GL  GA AVI P
Sbjct: 201 PNIIGPVLADLGIRFVFIVLLLSGLSFLGLGVQPPYADWGALVRENIGGLPFGAPAVIFP 260

Query: 268 ALAIASLTIGVNLLIDNLRSK 288
           + AIASLTI VNLLIDNL  K
Sbjct: 261 SFAIASLTISVNLLIDNLPQK 281