Pairwise Alignments

Query, 293 a.a., DNA-directed RNA polymerase subunit alpha from Herbaspirillum seropedicae SmR1

Subject, 295 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  175 bits (444), Expect = 1e-48
 Identities = 99/276 (35%), Positives = 144/276 (52%), Gaps = 12/276 (4%)

Query: 22  PAKRVRRHSTMAW--------IGMAIVGFWILMAILGPSISPYDATAIVDTDVFSGMSHK 73
           PA+R  R +   W        +G  I+    L AILG   +PY    +      SG S +
Sbjct: 8   PARRFSRFNAERWRATPGPFKVGAVILVAHALFAILGVFWTPYGFAEMGAGLPLSGASWQ 67

Query: 74  FLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVISRAL 133
             +G D +GRD+ SR + G    + L+ A T+L    GT + L + + GGW D V  R +
Sbjct: 68  HPMGLDQIGRDVFSRFMHGAHIVLMLSFAGTMLGMVAGTTLGLLSGYIGGWFDEVTQRIV 127

Query: 134 DALISIPSKMFALMMVATFGSSM----LLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 189
           +A+ISIP    AL+M+   G ++    +L+V    + Y P   RIAR+ A+++   EYV 
Sbjct: 128 EAMISIPFLALALVMIIAAGPALAGKPVLIVFVVGLVYAPRIVRIARAAAMDIATREYVA 187

Query: 190 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 249
            A  RGEG W I+  E+LPN    +L +F LR  Y  +L+  L FL  G++PP  +WG +
Sbjct: 188 VAELRGEGTWSIVFREILPNAANVLLVEFSLRLSYAPILIGALGFLGFGIRPPTPEWGLM 247

Query: 250 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNL 285
           + EN + L    + V  P L +ASL IG NL  D L
Sbjct: 248 ISENRNLLIASPVTVFGPGLGLASLVIGFNLFTDGL 283