Pairwise Alignments

Query, 293 a.a., DNA-directed RNA polymerase subunit alpha from Herbaspirillum seropedicae SmR1

Subject, 273 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  150 bits (379), Expect = 3e-41
 Identities = 87/256 (33%), Positives = 141/256 (55%), Gaps = 5/256 (1%)

Query: 34  WIGMAIVGFWILMAILGPSISPYDATAIVDTDVFSGM---SHKFLLGSDYLGRDMLSRIL 90
           W+G  +    IL  IL P I+P+D   ++D D+ +        F  G+D  GRD+ +RIL
Sbjct: 8   WLGAGLTTLVILAGILAPWIAPFDP--VLDADLMNSELPPDATFWFGTDGQGRDVYTRIL 65

Query: 91  FGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVISRALDALISIPSKMFALMMVA 150
           +G + ++ + + + V+ S  G  + + A + GGW D +++   + +++IPS +FAL ++A
Sbjct: 66  YGAQISLTVGIVSQVINSIIGVTLGMTAGYWGGWWDDLVNGFTNVMLAIPSLIFALAVMA 125

Query: 151 TFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQAARARGEGVWYIMTVEMLPNM 210
             G  +  L++   +T      RIARS  ++++++ YVQAA+  G G   IM  ++LPNM
Sbjct: 126 VLGPGLPSLLIALGLTNWSWTCRIARSSTLSLKSLGYVQAAQTLGYGDLRIMFTQILPNM 185

Query: 211 IRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSLVRENISGLGEGALAVIMPALA 270
           + P+L    L     VL  + LSFL LG+QPP   WGS++ +    +       I P LA
Sbjct: 186 MGPILVMATLGMGSAVLSEAALSFLGLGIQPPFPSWGSMLTDARQLIQLAPWVAIFPGLA 245

Query: 271 IASLTIGVNLLIDNLR 286
           I    +G NLL D LR
Sbjct: 246 IFLSVLGFNLLGDGLR 261