Pairwise Alignments

Query, 582 a.a., glycerol ABC transporter, substrate-binding component (from data) from Herbaspirillum seropedicae SmR1

Subject, 481 a.a., transporter, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 44.3 bits (103), Expect = 1e-08
 Identities = 69/286 (24%), Positives = 104/286 (36%), Gaps = 33/286 (11%)

Query: 85  YESKTLAKAFEEITGIKVIHDVIQEGDVVEKMQTSLQSGKSIYDGWVNDSDLIGTHYRNG 144
           Y ++ +   F E TG+KV     +   + E    +L  G+  YD    ++        NG
Sbjct: 50  YLTQEMLPKFTEKTGVKVNVISTELESMFELQTQALLMGEGKYDLLTMEAGWAKEWAANG 109

Query: 145 QTVVLTDYMAGPGKEYTNPGLD-LKDFIGTSFTT-----APDGKLYQLPDQQFANLYWFR 198
            TV L +      K Y   G   ++ ++   + +     + + +L+ +P   +     +R
Sbjct: 110 YTVPLLEL----AKLYDPDGEKAMESYLEPYYPSLLNILSYNRELHAIPYNNYVMGSHYR 165

Query: 199 ADWFARKDLQEKFKAKYGYELGVPQNWSAYEDIAAFFTNDVKELDGKKIYGHMDYG---- 254
           AD F  K  Q  F  ++GY L    N     D A FFT    EL  +K   H  YG    
Sbjct: 166 ADLFENKTEQAHFLQRFGYPLKPATNVEELADQAVFFTRKAGELLAEKPLTHDFYGLALM 225

Query: 255 -KKDPSLGWRFTDAWLSMAGAADKGLPNGLPVDEWGIRVADDKCTPVGASVARGGATNSP 313
               P +   F+    S+ GA             W I     K T           T + 
Sbjct: 226 SGNKPHINDEFSSIIWSLGGAW-----------MWPIYNQQKKLTHFEV------PTVNQ 268

Query: 314 AAVYALTKYLDWMKKYAPPEALGMTFSEAGPVPAQGHIAQQIFWYS 359
            A+ A   Y   M  YA P      F+EA    A G +A   F Y+
Sbjct: 269 EAIKAGLAYRQLM-PYAYPADDKFAFNEAANAMATGQVAIWPFAYN 313