Pairwise Alignments

Query, 598 a.a., DNA primase from Herbaspirillum seropedicae SmR1

Subject, 647 a.a., DNA primase, catalytic core from Pseudomonas stutzeri RCH2

 Score =  405 bits (1041), Expect = e-117
 Identities = 210/426 (49%), Positives = 289/426 (67%), Gaps = 13/426 (3%)

Query: 1   VIPQSFIQDLLNRVDIVDVVGRYVQLKKGGANFMGLCPFHNEKSPSFTVSPTKQFYHCFG 60
           +IPQSFI DLLNR DIV+VVG  +QLKK G N+  LCPFH EK+PSF+VSP KQFY+CFG
Sbjct: 4   LIPQSFIDDLLNRSDIVEVVGSRIQLKKAGKNYSALCPFHKEKTPSFSVSPDKQFYYCFG 63

Query: 61  CGAHGTAISFLIEYSGMGFVEAVKDLAQNVGMVVPEREDSIPLAQRQEKQAKSMALSDVM 120
           CGA G A+ F++++  + F +AV++LA+  GM VP  +      + + +Q     L  ++
Sbjct: 64  CGAGGNALGFVMDHDQLDFPQAVEELAKRAGMEVPHEDSG---RKHKPRQPVDSPLYPLL 120

Query: 121 TRANDFYRHQLRS---AQPAIAYLKGRGLTGEIAARFGLGYSPDEWDSLRQVFPD--YDN 175
             A D+YR  L+S    + A+ YLKGRGL+G IA  FGLG++P  WD+L +         
Sbjct: 121 AAAADYYRQALKSHPTRKSAVEYLKGRGLSGVIARDFGLGFAPPGWDNLMKHLGGDALQQ 180

Query: 176 EALVESGLVIDKSEEGGAHRKRYDRFRGRIMFPIRNTKGQVIGFGGRVMDGGEPKYLNSP 235
           +AL+++GL+I+ +E G    KRYDRFR R+MFPIR+++G+VI FGGRV+   +PKYLNSP
Sbjct: 181 KALIDAGLLIENAENG----KRYDRFRDRVMFPIRDSRGRVIAFGGRVLGDDKPKYLNSP 236

Query: 236 ETPLFQKGSELYGLFEARQAIREAGYALVTEGYMDVVALAQLGFPQAVATLGTACTPIHV 295
           ETP+F KG ELYGL+EARQ  R+    +V EGYMDV+ALAQ G   AVATLGTA +  H+
Sbjct: 237 ETPVFHKGQELYGLYEARQTNRDLDEIMVVEGYMDVIALAQQGLRNAVATLGTATSEEHL 296

Query: 296 QKLVRQTDQVIFSFDGDNAGRRAARRALEACLPHASDNKTIKFLFLPKEHDPDSYVREMG 355
           ++L R    V+F FDGD AGR+AA RALEA LP+  D +  +FLFLP   DPD+ VR  G
Sbjct: 297 KRLFRIVPSVLFCFDGDAAGRKAAWRALEATLPNLQDGRRARFLFLPDGEDPDTLVRAEG 356

Query: 356 APAFEEQIRE-ALPLSQFLLREIIGENDLRTPEGRAHAQFAAKPLLQALPASALRLQIVR 414
             AF  +I++ + PL+ +  +++  E D R+ EG+AH    A PL++ +P S LR  + +
Sbjct: 357 TDAFRARIQQHSQPLADYFFQQLSDEADPRSLEGKAHLATLAAPLIEKIPGSNLRTLMRQ 416

Query: 415 SVAQAT 420
            +A+ T
Sbjct: 417 RLAEIT 422